C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-stranded DNA binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061887 Ssbp3 10090 + 4:106910701-107049694 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030367 Ssbp3-001 106911470-107049694 protein_coding
  ENSMUST00000072753 Ssbp3-002 106911533-107048567 protein_coding
  ENSMUST00000097934 Ssbp3-006 106911667-107048498 protein_coding
  ENSMUST00000124936 Ssbp3-007 106955859-107048692 processed_transcript
  ENSMUST00000131111 Ssbp3-013 107030832-107031485 processed_transcript
  ENSMUST00000131440 Ssbp3-010 106966426-107031067 protein_coding
  ENSMUST00000132506 Ssbp3-011 106911861-107010534 processed_transcript
  ENSMUST00000133827 Ssbp3-014 107038202-107048519 processed_transcript
  ENSMUST00000136487 Ssbp3-016 107046954-107048450 processed_transcript
  ENSMUST00000137786 Ssbp3-012 107028193-107037363 processed_transcript
  ENSMUST00000138475 Ssbp3-008 106923225-107038248 processed_transcript
  ENSMUST00000141963 Ssbp3-004 106941698-107048543 processed_transcript
  ENSMUST00000146659 Ssbp3-003 106912298-107048515 processed_transcript
  ENSMUST00000148842 Ssbp3-009 106923185-107031021 processed_transcript
  ENSMUST00000149926 Ssbp3-017 106911511-107038742 protein_coding
  ENSMUST00000150915 Ssbp3-005 106910701-107031069 processed_transcript
  ENSMUST00000156288 Ssbp3-015 107038233-107040657 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030367ENSMUST00000072753ENSMUST00000097934ENSMUST00000133827ENSMUST00000146659ENSMUST00000149926
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030367 23.598±0.19 24.046±0.00 14.004±0.98 106.268±12.30 2.873±0.73 29.508±3.33 8.489±0.00 16.352±0.12 16.952±5.63 14.932±0.05 0.804±0.00 14.512±10.11 9.862±0.12 3.502±1.82
ENSMUST00000072753 5.759±0.46 N/A 10.115±4.20 N/A N/A N/A N/A N/A 13.181±6.80 N/A 2.747±0.63 N/A 8.786±1.06 N/A
ENSMUST00000097934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.460±0.00 N/A 3.979±1.54 N/A
ENSMUST00000133827 N/A N/A N/A 24.047±0.00 N/A N/A N/A N/A 21.757±0.00 N/A 3.582±0.00 21.572±2.80 7.013±1.42 2.527±0.00
ENSMUST00000146659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.522±0.00 3.037±2.48
ENSMUST00000149926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.688±0.29 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085J CIL_00085J_0002 VISTA 4:106564211-107167561
CIL_0001FM CIL_0001FM_0002 CGP 4:106744555-107049694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003697 ISA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006461 IMP protein complex assembly
GO:0008284 IMP positive regulation of cell proliferation
GO:0021501 IMP prechordal plate formation
GO:0021547 IMP midbrain-hindbrain boundary initiation
GO:0043234 IDA protein complex
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060322 IGI head development
GO:0060323 IMP head morphogenesis
GO:2000744 IMP positive regulation of anterior head development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030155 ssbp3b single stranded DNA binding protein 3b protein_coding Danio_rerio
ENSDARG00000058237 ssbp3a single stranded DNA binding protein 3a protein_coding Danio_rerio
ENSG00000157216 SSBP3 single stranded DNA binding protein 3 protein_coding Homo_sapiens

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