C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030367 Ssbp3-001 ENSMUSG00000061887 10090 + 4:106911470-107049694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030367 23.598±0.19 24.046±0.00 14.004±0.98 106.268±12.30 2.873±0.73 29.508±3.33 8.489±0.00 16.352±0.12 16.952±5.63 14.932±0.05 0.804±0.00 14.512±10.11 9.862±0.12 3.502±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085J CIL_00085J_0002 VISTA 4:106564211-107167561
CIL_0001FM CIL_0001FM_0002 CGP 4:106744555-107049694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003697 ISA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006461 IMP protein complex assembly
GO:0008284 IMP positive regulation of cell proliferation
GO:0021501 IMP prechordal plate formation
GO:0021547 IMP midbrain-hindbrain boundary initiation
GO:0043234 IDA protein complex
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060322 IGI head development
GO:0060323 IMP head morphogenesis
GO:2000744 IMP positive regulation of anterior head development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326956 SSBP3-012 processed_transcript Homo_sapiens 0 1498
ENST00000357475 SSBP3-001 protein_coding Homo_sapiens 0 1177
ENST00000371319 SSBP3-007 protein_coding Homo_sapiens 0 1498
ENST00000371320 SSBP3-002 protein_coding Homo_sapiens 0 2671
ENST00000395959 AC004987.9-001 processed_pseudogene Homo_sapiens 0 1661
ENST00000401540 AC018865.5-001 processed_pseudogene Homo_sapiens 0 1548
ENST00000404460 PLEKHB2-002 protein_coding Homo_sapiens 0 604
ENST00000417338 AC073869.2-001 processed_pseudogene Homo_sapiens 0 1417
ENST00000417664 SSBP3-013 protein_coding Homo_sapiens 0 2152
ENST00000420121 SSBP3-006 retained_intron Homo_sapiens 0 765
ENST00000426150 SSBP3-004 processed_transcript Homo_sapiens 0 1061
ENST00000428627 AC004987.10-001 processed_pseudogene Homo_sapiens 0 603
ENST00000444533 SSBP3-005 protein_coding Homo_sapiens 0 654
ENST00000456143 LA16c-60G3.7-001 processed_pseudogene Homo_sapiens 0 1476
ENST00000511039 AC079776.6-001 unprocessed_pseudogene Homo_sapiens 0 551
ENST00000525990 SSBP3-014 protein_coding Homo_sapiens 0 518
ENST00000528787 SSBP3-009 processed_transcript Homo_sapiens 0 394
ENST00000528930 SSBP3-010 retained_intron Homo_sapiens 0 732
ENST00000530618 SSBP3-003 retained_intron Homo_sapiens 2e-26 122
ENST00000533209 SSBP3-008 retained_intron Homo_sapiens 0 462
ENST00000533946 SSBP3-011 processed_transcript Homo_sapiens 0 381
ENST00000546860 RP11-536C10.11-001 processed_pseudogene Homo_sapiens 0 1454
ENST00000549567 RP11-536C10.14-001 processed_pseudogene Homo_sapiens 0 479
ENST00000550646 RP11-597A11.3-001 processed_pseudogene Homo_sapiens 0 1570
ENST00000551999 RP11-536C10.21-001 processed_pseudogene Homo_sapiens 0 521
ENST00000605337 MRPL37-005 protein_coding Homo_sapiens 0.0000002 62
ENST00000610401 SSBP3-201 protein_coding Homo_sapiens 0 1502

Loading