C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000013771 Trim54-001 ENSMUSG00000062077 10090 + 5:31116712-31137628 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000013771
Transcript ID Breast Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000013771 21.662±8.95 74.584±15.93 1.285±0.30 0.126±0.11 3.356±2.18 158.283±21.93 0.022±0.00 3.308±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EE CIL_0000EE_0002 CGP 5:31106285-31137630
CIL_0000ED CIL_0000ED_0002 CGP 5:31116712-31138829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0005875 IDA microtubule associated complex
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0007275 IEA multicellular organismal development
GO:0008017 IDA microtubule binding
GO:0008270 IEA zinc ion binding
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127859 protein_coding Danio_rerio 0.0000000003 71
ENST00000296098 TRIM54-001 protein_coding Homo_sapiens 0 745
ENST00000380075 TRIM54-002 protein_coding Homo_sapiens 0 1387

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