C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114637 Trim54-002 ENSMUSG00000062077 10090 + 5:31116734-31137630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverLungPlacentaENSMUST00000114637
Transcript ID Brain Breast Kidney Liver Lung Placenta
ENSMUST00000114637 0.145±0.17 5.736±0.00 0.073±0.00 0.012±0.00 0.936±0.00 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EE CIL_0000EE_0002 CGP 5:31106285-31137630
CIL_0000ED CIL_0000ED_0002 CGP 5:31116712-31138829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005875 IDA microtubule associated complex
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0008017 IDA microtubule binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127859 protein_coding Danio_rerio 0.0000000003 71
ENST00000296098 TRIM54-001 protein_coding Homo_sapiens 0 745
ENST00000380075 TRIM54-002 protein_coding Homo_sapiens 0 1410

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