C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: troponin T1, skeletal, slow
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000064179 Tnnt1 10090 - 7:4504570-4516382 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071798 Tnnt1-001 4504570-4515975 protein_coding
  ENSMUST00000086502 Tnnt1-012 4504786-4508025 processed_transcript
  ENSMUST00000108587 Tnnt1-002 4504570-4516004 protein_coding
  ENSMUST00000163538 Tnnt1-010 4508578-4514574 protein_coding
  ENSMUST00000163560 Tnnt1-009 4513829-4515107 protein_coding
  ENSMUST00000163710 Tnnt1-003 4504663-4515959 protein_coding
  ENSMUST00000163722 Tnnt1-005 4509610-4516382 protein_coding
  ENSMUST00000166161 Tnnt1-004 4504755-4514368 protein_coding
  ENSMUST00000166268 Tnnt1-011 4507568-4515961 protein_coding
  ENSMUST00000166959 Tnnt1-006 4508510-4514615 protein_coding
  ENSMUST00000168111 Tnnt1-007 4504784-4509938 retained_intron
  ENSMUST00000169571 Tnnt1-008 4507600-4509798 retained_intron
  ENSMUST00000178163 Tnnt1-201 4504663-4515975 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071798ENSMUST00000086502ENSMUST00000108587ENSMUST00000163538ENSMUST00000163560ENSMUST00000163710ENSMUST00000166161ENSMUST00000166268ENSMUST00000166959ENSMUST00000168111ENSMUST00000169571ENSMUST00000178163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071798 N/A N/A N/A 0.406±0.00 N/A N/A 1.239±0.41 0.914±0.11 3.182±0.00 0.118±0.05 107.393±67.91 0.590±0.38 N/A N/A
ENSMUST00000086502 0.136±0.04 0.618±0.25 N/A 0.615±0.00 0.317±0.11 0.607±0.30 N/A 0.146±0.07 0.361±0.27 0.885±0.69 N/A 2.688±1.64 0.563±0.00 0.234±0.15
ENSMUST00000108587 N/A N/A 0.461±0.00 0.309±0.08 0.152±0.00 N/A 1.114±0.02 0.754±0.07 2.003±0.00 0.075±0.00 67.430±46.59 1.146±0.81 N/A 0.148±0.00
ENSMUST00000163538 0.119±0.01 0.313±0.21 0.579±0.00 37.323±0.00 0.248±0.18 0.245±0.05 1.014±0.04 0.827±0.00 N/A 0.386±0.00 N/A 1.987±3.07 N/A 0.148±0.00
ENSMUST00000163560 1.370±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163710 N/A N/A 1.016±0.25 3.713±4.80 0.430±0.25 0.320±0.00 N/A N/A 0.604±0.44 N/A 30.284±16.30 3.325±2.13 2.496±1.56 0.261±0.06
ENSMUST00000166161 N/A N/A 0.819±0.07 21.907±0.00 0.384±0.16 0.627±0.00 N/A 0.867±0.00 0.587±0.38 0.219±0.00 24.459±17.11 N/A 11.370±15.73 N/A
ENSMUST00000166268 N/A N/A N/A 0.375±0.00 N/A 0.216±0.00 N/A 0.326±0.11 1.344±1.13 N/A N/A 1.632±1.31 N/A N/A
ENSMUST00000166959 0.971±0.00 N/A 1.174±0.00 0.273±0.00 N/A N/A 2.125±0.42 0.311±0.21 N/A 0.322±0.05 N/A 0.334±0.07 N/A 0.284±0.12
ENSMUST00000168111 N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A 0.067±0.00 N/A N/A 0.372±0.00 0.382±0.00 N/A
ENSMUST00000169571 0.132±0.00 0.568±0.00 N/A N/A N/A 0.404±0.18 N/A 0.325±0.26 1.362±0.61 N/A N/A 0.812±0.00 5.175±4.94 N/A
ENSMUST00000178163 N/A N/A N/A N/A N/A N/A N/A N/A 0.653±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RJ CIL_0003RJ_0002 CGP 7:4481520-4516382
CIL_00065K CIL_00065K_0002 CGP 7:4504570-4524229

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003009 IEA skeletal muscle contraction
GO:0005523 IEA tropomyosin binding
GO:0005861 IEA troponin complex
GO:0006937 IEA regulation of muscle contraction
GO:0031014 IEA troponin T binding
GO:0031444 IEA slow-twitch skeletal muscle fiber contraction
GO:0045932 IEA negative regulation of muscle contraction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037954 tnnt1 troponin T type 1 (skeletal, slow) protein_coding Danio_rerio
ENSG00000105048 TNNT1 troponin T type 1 (skeletal, slow) protein_coding Homo_sapiens

Loading