C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132395 Cntn4-008 ENSMUSG00000064293 10090 + 6:106513558-106697756 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000132395
Transcript ID Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000132395 4.110±0.00 0.042±0.02 0.039±0.00 0.023±0.01 0.002±0.00 0.120±0.00 0.516±0.34 0.011±0.01 0.069±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050H CIL_00050H_0002 CGP 6:104492790-106699310
CIL_0007CD CIL_0007CD_0002 CGP 6:105677660-106745109

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397459 CNTN4-002 protein_coding Homo_sapiens 0 3062
ENST00000397461 CNTN4-001 protein_coding Homo_sapiens 0 3042
ENST00000418658 CNTN4-009 protein_coding Homo_sapiens 0 3042
ENST00000427331 CNTN4-201 protein_coding Homo_sapiens 0 3042
ENST00000427741 CNTN4-003 nonsense_mediated_decay Homo_sapiens 0 2087
ENST00000430505 CNTN4-010 retained_intron Homo_sapiens 0 1474
ENST00000438282 CNTN4-006 retained_intron Homo_sapiens 0 697
ENST00000473845 CNTN4-015 protein_coding Homo_sapiens 0 508
ENST00000475817 CNTN4-017 processed_transcript Homo_sapiens 0 658
ENST00000484686 CNTN4-016 retained_intron Homo_sapiens 0 1472

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