C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113260 Cntn4-007 ENSMUSG00000064293 10090 + 6:105924800-106674270 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000113260
Transcript ID Adrenal Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000113260 0.051±0.00 2.642±0.00 0.092±0.05 0.055±0.00 0.008±0.00 0.412±0.14 0.016±0.00 0.051±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050H CIL_00050H_0002 CGP 6:104492790-106699310
CIL_0007CD CIL_0007CD_0002 CGP 6:105677660-106745109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007399 ISS nervous system development
GO:0007420 ISS brain development
GO:0031175 ISS neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0045665 ISS negative regulation of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000091416 cntn3a.1-201 protein_coding Danio_rerio 0 209
ENSDART00000131355 cntn3a.1-001 protein_coding Danio_rerio 0 209
ENST00000397459 CNTN4-002 protein_coding Homo_sapiens 0 1495
ENST00000397461 CNTN4-001 protein_coding Homo_sapiens 0 2885
ENST00000418658 CNTN4-009 protein_coding Homo_sapiens 0 2885
ENST00000422330 CNTN4-004 protein_coding Homo_sapiens 0 623
ENST00000427331 CNTN4-201 protein_coding Homo_sapiens 0 2876
ENST00000427741 CNTN4-003 nonsense_mediated_decay Homo_sapiens 0 1690
ENST00000430505 CNTN4-010 retained_intron Homo_sapiens 0 2872
ENST00000434053 CNTN4-011 protein_coding Homo_sapiens 0 451
ENST00000438282 CNTN4-006 retained_intron Homo_sapiens 0 2074
ENST00000455083 CNTN4-005 protein_coding Homo_sapiens 0 333
ENST00000473058 CNTN4-013 processed_transcript Homo_sapiens 0 621
ENST00000473173 CNTN4-014 retained_intron Homo_sapiens 0 202
ENST00000473845 CNTN4-015 protein_coding Homo_sapiens 0 508
ENST00000475817 CNTN4-017 processed_transcript Homo_sapiens 0 658
ENST00000480113 CNTN4-012 retained_intron Homo_sapiens 0 348

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