C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161204 Rdh11-001 ENSMUSG00000066441 10090 - 12:79174337-79192293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161204 3.771±0.63 3.049±0.70 4.896±0.81 4.868±1.04 2.838±0.95 2.164±0.31 0.654±0.07 3.604±0.41 15.652±5.72 3.064±0.35 0.498±0.16 4.375±1.00 7.315±7.97 30.182±7.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MK CIL_0001MK_0002 CGP 12:79156017-79192293
CIL_0002CM CIL_0002CM_0002 CGP 12:79174337-79222665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001917 IDA photoreceptor inner segment
GO:0004745 ISS retinol dehydrogenase activity
GO:0005622 ISS intracellular
GO:0005783 IEA endoplasmic reticulum
GO:0016021 IEA integral component of membrane
GO:0016062 IMP adaptation of rhodopsin mediated signaling
GO:0042572 ISS retinol metabolic process
GO:0042574 ISO retinal metabolic process
GO:0052650 ISO NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381346 RDH11-001 protein_coding Homo_sapiens 0 845
ENST00000428130 RDH11-004 protein_coding Homo_sapiens 0 394
ENST00000553384 RDH11-003 protein_coding Homo_sapiens 4e-19 100
ENST00000553816 RDH11-012 retained_intron Homo_sapiens 0 394
ENST00000556692 RDH11-007 retained_intron Homo_sapiens 4e-31 139
ENST00000557273 RDH11-011 protein_coding Homo_sapiens 3e-31 139
ENST00000557726 RDH11-010 protein_coding Homo_sapiens 1e-30 137

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