C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085254 Rdh11-002 ENSMUSG00000066441 10090 - 12:79175551-79190961 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085254 1.593±0.27 1.056±0.19 2.137±0.15 2.571±0.52 1.735±0.54 1.738±0.72 0.410±0.04 2.008±0.69 7.485±2.34 2.086±0.91 0.735±0.15 4.155±2.85 6.191±1.96 36.276±5.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MK CIL_0001MK_0002 CGP 12:79156017-79192293
CIL_0002CM CIL_0002CM_0002 CGP 12:79174337-79222665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001917 IDA photoreceptor inner segment
GO:0016062 IMP adaptation of rhodopsin mediated signaling
GO:0042572 ISO retinol metabolic process
GO:0042574 ISO retinal metabolic process
GO:0052650 ISO NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381346 RDH11-001 protein_coding Homo_sapiens 0 835
ENST00000428130 RDH11-004 protein_coding Homo_sapiens 0 385
ENST00000553384 RDH11-003 protein_coding Homo_sapiens 3e-16 92
ENST00000553816 RDH11-012 retained_intron Homo_sapiens 0 385
ENST00000556692 RDH11-007 retained_intron Homo_sapiens 2e-28 130
ENST00000557273 RDH11-011 protein_coding Homo_sapiens 2e-28 130
ENST00000557726 RDH11-010 protein_coding Homo_sapiens 6e-28 128

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