C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group nucleosomal binding domain 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066456 Hmgn3 10090 - 9:83109948-83146685 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000161796 Hmgn3-002 83109948-83146605 protein_coding
  ENSMUST00000162246 Hmgn3-001 83109948-83146685 protein_coding
  ENSMUST00000185315 Hmgn3-003 83109948-83146530 protein_coding
  ENSMUST00000185359 Hmgn3-008 83110720-83111093 retained_intron
  ENSMUST00000187193 Hmgn3-006 83109948-83146470 protein_coding
  ENSMUST00000189777 Hmgn3-007 83109948-83110825 processed_transcript
  ENSMUST00000190154 Hmgn3-004 83110378-83146517 nonsense_mediated_decay
  ENSMUST00000190580 Hmgn3-009 83109968-83111131 retained_intron
  ENSMUST00000191105 Hmgn3-005 83110181-83112568 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161796ENSMUST00000162246ENSMUST00000185315ENSMUST00000185359ENSMUST00000187193ENSMUST00000189777ENSMUST00000190154ENSMUST00000190580
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161796 N/A 5.086±0.75 19.876±1.89 13.117±2.57 1.806±0.00 N/A N/A 1.527±0.00 0.644±0.35 N/A 0.900±0.27 6.421±2.69 1.340±0.57 1.382±0.94
ENSMUST00000162246 N/A N/A 9.975±0.08 N/A N/A N/A N/A N/A 0.469±0.11 N/A 0.608±0.23 3.805±1.51 1.085±0.30 N/A
ENSMUST00000185315 6.489±0.38 8.287±1.13 21.364±7.08 19.546±13.34 5.267±3.08 1.524±0.43 1.828±0.34 2.317±0.41 0.539±0.30 2.690±1.15 0.558±0.17 4.276±1.48 0.749±0.61 1.181±0.56
ENSMUST00000185359 N/A N/A N/A N/A N/A 7.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.390±0.00 N/A
ENSMUST00000189777 N/A N/A N/A N/A N/A N/A 1.812±0.00 2.392±0.00 0.262±0.00 2.427±0.00 N/A N/A N/A N/A
ENSMUST00000190154 N/A N/A N/A 23.015±0.00 N/A N/A N/A N/A N/A 0.875±0.00 0.547±0.00 10.740±0.00 2.603±0.00 2.326±0.00
ENSMUST00000190580 N/A N/A N/A N/A N/A N/A N/A 2.133±0.00 0.491±0.17 N/A 0.751±0.20 5.600±0.42 1.020±0.00 1.396±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000621 CIL_000621_0003 CGP 9:82866159-83146685
CIL_000626 CIL_000626_0003 CGP 9:83109948-83441127

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003682 IDA chromatin binding
GO:0005634 ISS nucleus
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0031492 IEA nucleosomal DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0061178 IMP regulation of insulin secretion involved in cellular response to glucose stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036754 hmgn3 high mobility group nucleosomal binding domain 3 protein_coding Danio_rerio
ENSG00000118418 HMGN3 high mobility group nucleosomal binding domain 3 protein_coding Homo_sapiens

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