C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group nucleosomal binding domain 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118418 HMGN3 9606 - 6:79201245-79234738 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000275036 HMGN3-002 79201245-79234689 protein_coding
  ENST00000344726 HMGN3-001 79201245-79234689 protein_coding
  ENST00000620514 HMGN3-201 79201249-79234738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000275036ENST00000344726ENST00000620514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000275036 7.043±0.00 9.709±0.00 3.385±0.00 6.009±0.67 9.370±5.67 7.310±4.97 7.612±5.59 19.231±10.68 4.285±0.95 9.617±5.36 2.920±0.00 20.970±10.60 45.301±25.72 29.751±6.29
ENST00000344726 3.267±0.00 14.025±0.00 4.630±0.00 9.773±4.18 4.516±2.74 5.593±3.18 N/A 11.571±9.69 7.353±0.00 8.873±0.00 N/A 17.652±9.69 24.616±7.95 24.269±1.76
ENST00000620514 1.253±0.00 3.984±0.00 N/A 7.397±0.00 7.425±0.00 3.157±0.00 41.065±0.00 9.815±0.00 3.332±0.00 N/A 6.137±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000621 CIL_000621_0002 CGP 6:78935867-79234738
CIL_000626 CIL_000626_0002 CGP 6:79201245-79537458

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003682 IEA chromatin binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification
GO:0031492 IEA nucleosomal DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046966 NAS thyroid hormone receptor binding
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0061178 IEA regulation of insulin secretion involved in cellular response to glucose stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036754 hmgn3 high mobility group nucleosomal binding domain 3 protein_coding Danio_rerio
ENSMUSG00000066456 Hmgn3 high mobility group nucleosomal binding domain 3 protein_coding Mus_musculus

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