C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190154 Hmgn3-004 ENSMUSG00000066456 10090 - 9:83110378-83146517 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungMuscleOvaryPlacentaTestisENSMUST00000190154
Transcript ID Brain Lung Muscle Ovary Placenta Testis
ENSMUST00000190154 23.015±0.00 0.875±0.00 0.547±0.00 10.740±0.00 2.603±0.00 2.326±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000621 CIL_000621_0003 CGP 9:82866159-83146685
CIL_000626 CIL_000626_0003 CGP 9:83109948-83441127

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003682 IDA chromatin binding
GO:0005634 ISS nucleus
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0031492 IEA nucleosomal DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0061178 IMP regulation of insulin secretion involved in cellular response to glucose stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275036 HMGN3-002 protein_coding Homo_sapiens 0 346
ENST00000344726 HMGN3-001 protein_coding Homo_sapiens 0 405
ENST00000620514 HMGN3-201 protein_coding Homo_sapiens 0 403

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