C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000621_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015970-ENSDARG00000036754 CGP 7955 23:31510553-31611386
GeneTranscriptPositionBiotype
ENSDARG00000015970 (phip)
pleckstrin homology domain interacting protein 		ENSDART00000008401 (phip-201) 31510553-31577989 protein_coding
ENSDART00000131211 (phip-003) 31532131-31532761 retained_intron
ENSDART00000131981 (phip-002) 31578032-31584073 processed_transcript
ENSDART00000138106 (phip-001) 31514741-31584966 protein_coding
ENSDARG00000036754 (hmgn3)
high mobility group nucleosomal binding domain 3 		ENSDART00000053367 (hmgn3-001) 31596667-31611386 protein_coding
ENSDART00000135620 (hmgn3-002) 31596690-31611368 protein_coding
CIL_000621_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146247-ENSG00000118418 CGP 9606 6:78935867-79234738
GeneTranscriptPositionBiotype
ENSG00000118418 (HMGN3)
high mobility group nucleosomal binding domain 3 		ENST00000275036 (HMGN3-002) 79201245-79234689 protein_coding
ENST00000344726 (HMGN3-001) 79201245-79234689 protein_coding
ENST00000620514 (HMGN3-201) 79201249-79234738 protein_coding
ENSG00000146243 (IRAK1BP1)
interleukin-1 receptor-associated kinase 1 binding protein 1 		ENST00000369940 (IRAK1BP1-001) 78867472-78903102 protein_coding
ENST00000606868 (IRAK1BP1-004) 78867607-78946440 nonsense_mediated_decay
ENST00000606929 (IRAK1BP1-002) 78898192-78903102 protein_coding
ENST00000607739 (IRAK1BP1-003) 78871291-78903101 protein_coding
ENSG00000146247 (PHIP)
pleckstrin homology domain interacting protein 		ENST00000275034 (PHIP-001) 78935867-79078236 protein_coding
ENST00000479165 (PHIP-002) 78940546-78982943 processed_transcript
ENSG00000217512 (RP11-477E3.2)
 ENST00000406574 (RP11-477E3.2-001) 79067692-79068138 processed_pseudogene
ENSG00000251969 (AL356776.1)
 ENST00000516160 (AL356776.1-201) 78961496-78961572 miRNA
ENSG00000270362 (HMGN3-AS1)
HMGN3 antisense RNA 1 		ENST00000604516 (HMGN3-AS1-001) 79233718-79236797 antisense
CIL_000621_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032253-ENSMUSG00000066456 CGP 10090 9:82866159-83146685
GeneTranscriptPositionBiotype
ENSMUSG00000032253 (Phip)
pleckstrin homology domain interacting protein 		ENSMUST00000034787 (Phip-003) 82866159-82975516 protein_coding
ENSMUST00000186089 (Phip-012) 82900656-82932575 nonsense_mediated_decay
ENSMUST00000186099 (Phip-017) 82915816-82917609 retained_intron
ENSMUST00000187021 (Phip-004) 82913079-82975426 retained_intron
ENSMUST00000188828 (Phip-002) 82944504-82975416 retained_intron
ENSMUST00000188850 (Phip-011) 82903443-82908965 retained_intron
ENSMUST00000188868 (Phip-010) 82894031-82975408 retained_intron
ENSMUST00000189209 (Phip-013) 82888903-82892188 retained_intron
ENSMUST00000189927 (Phip-014) 82925848-82928151 retained_intron
ENSMUST00000189985 (Phip-009) 82927158-82974268 protein_coding
ENSMUST00000190101 (Phip-006) 82894612-82896092 retained_intron
ENSMUST00000190405 (Phip-007) 82929966-82933032 retained_intron
ENSMUST00000190774 (Phip-005) 82870322-82896372 retained_intron
ENSMUST00000190822 (Phip-016) 82913689-82927119 nonsense_mediated_decay
ENSMUST00000190838 (Phip-018) 82955805-82975419 retained_intron
ENSMUST00000190936 (Phip-001) 82897165-82901113 retained_intron
ENSMUSG00000066456 (Hmgn3)
high mobility group nucleosomal binding domain 3 		ENSMUST00000161796 (Hmgn3-002) 83109948-83146605 protein_coding
ENSMUST00000162246 (Hmgn3-001) 83109948-83146685 protein_coding
ENSMUST00000185315 (Hmgn3-003) 83109948-83146530 protein_coding
ENSMUST00000185359 (Hmgn3-008) 83110720-83111093 retained_intron
ENSMUST00000187193 (Hmgn3-006) 83109948-83146470 protein_coding
ENSMUST00000189777 (Hmgn3-007) 83109948-83110825 processed_transcript
ENSMUST00000190154 (Hmgn3-004) 83110378-83146517 nonsense_mediated_decay
ENSMUST00000190580 (Hmgn3-009) 83109968-83111131 retained_intron
ENSMUST00000191105 (Hmgn3-005) 83110181-83112568 retained_intron
ENSMUSG00000101144 (RP23-13G1.4)
predicted gene 29054 		ENSMUST00000187589 (RP23-13G1.4-001) 83145946-83147281 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000621_0001ENSDARG00000015970ENSDART00000008401ENSDART00000131211ENSDART00000131981ENSDART00000138106ENSDARG00000036754ENSDART00000053367ENSDART00000135620CIL_000621_0002ENSG00000118418ENST00000275036ENST00000344726ENST00000620514ENSG00000146243ENST00000369940ENST00000606868ENST00000606929ENST00000607739ENSG00000146247ENST00000275034ENST00000479165ENSG00000217512ENST00000406574ENSG00000251969ENST00000516160ENSG00000270362ENST00000604516CIL_000621_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000621_0001ENSDARG00000015970ENSDART00000008401ENSDARG00000036754ENSDART00000053367ENSDART00000135620CIL_000621_0002ENSG00000118418ENST00000275036ENST00000344726ENST00000620514ENSG00000146243ENST00000369940ENSG00000146247ENST00000275034ENST00000479165ENSG00000217512ENST00000406574ENSG00000251969ENST00000516160ENSG00000270362ENST00000604516CIL_000621_0003ENSMUSG00000032253ENSMUST00000034787ENSMUST00000186089ENSMUST00000187021ENSMUST00000188828ENSMUST00000188868ENSMUST00000190774ENSMUST00000190838ENSMUSG00000066456ENSMUST00000161796ENSMUST00000162246ENSMUST00000185315ENSMUST00000185359ENSMUST00000187193ENSMUST00000189777ENSMUST00000190154ENSMUST00000190580ENSMUSG00000101144ENSMUST00000187589
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015970 ENSDART00000008401 N/A N/A N/A N/A N/A N/A 0.720±0.00 0.779±0.07 1.952±0.00 N/A 0.537±0.00 N/A N/A N/A
ENSDART00000131211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000131981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000036754 ENSDART00000053367 N/A N/A N/A 78.210±47.34 N/A N/A 37.265±21.43 29.802±12.19 0.323±0.00 N/A 6.335±0.00 N/A N/A N/A
ENSDART00000135620 N/A N/A N/A N/A N/A N/A 12.591±0.23 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118418 ENST00000275036 7.043±0.00 9.709±0.00 3.385±0.00 6.009±0.67 9.370±5.67 7.310±4.97 7.612±5.59 19.231±10.68 4.285±0.95 9.617±5.36 2.920±0.00 20.970±10.60 45.301±25.72 29.751±6.29
ENST00000344726 3.267±0.00 14.025±0.00 4.630±0.00 9.773±4.18 4.516±2.74 5.593±3.18 N/A 11.571±9.69 7.353±0.00 8.873±0.00 N/A 17.652±9.69 24.616±7.95 24.269±1.76
ENST00000620514 1.253±0.00 3.984±0.00 N/A 7.397±0.00 7.425±0.00 3.157±0.00 41.065±0.00 9.815±0.00 3.332±0.00 N/A 6.137±0.00 N/A N/A N/A
ENSG00000146243 ENST00000369940 N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A N/A 1.086±0.16 0.258±0.04 1.192±0.00
ENST00000606868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000146247 ENST00000275034 3.898±0.00 1.709±0.00 3.558±0.00 4.349±0.75 6.321±3.90 5.521±1.01 2.184±0.57 2.555±0.83 4.660±4.06 7.199±2.39 1.779±0.61 3.859±2.23 4.536±3.78 6.572±3.38
ENST00000479165 N/A N/A 1.307±0.00 N/A N/A 2.401±0.00 1.226±0.00 N/A 3.498±0.00 5.103±0.00 0.366±0.00 2.024±0.49 N/A 3.346±0.00
ENSG00000217512 ENST00000406574 0.072±0.00 0.093±0.00 1.151±0.00 0.682±0.19 0.564±0.00 0.794±0.00 0.237±0.00 0.402±0.00 0.636±0.00 1.090±0.00 N/A 0.096±0.03 N/A 0.128±0.00
ENSG00000251969 ENST00000516160 N/A 1.111±0.00 N/A N/A N/A N/A N/A 3.338±0.00 0.478±0.00 N/A N/A 2.373±0.00 2.893±0.00 N/A
ENSG00000270362 ENST00000604516 0.435±0.00 N/A 0.502±0.00 0.682±0.00 0.397±0.00 1.228±0.00 N/A N/A 0.318±0.00 N/A 0.622±0.00 0.886±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032253 ENSMUST00000034787 2.231±0.60 1.729±0.62 0.975±0.52 3.374±0.92 2.607±0.36 0.993±0.17 1.342±0.15 1.638±0.30 0.859±0.41 3.337±0.66 0.214±0.05 2.746±0.99 1.502±0.78 0.935±0.25
ENSMUST00000186089 N/A N/A N/A 4.357±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.244±0.00
ENSMUST00000186099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187021 N/A 3.167±0.48 N/A N/A N/A 1.197±0.56 N/A N/A 0.321±0.00 2.131±0.00 N/A 3.066±0.79 N/A N/A
ENSMUST00000188828 N/A 2.675±0.00 N/A N/A N/A 0.850±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188868 N/A N/A N/A 2.410±0.00 N/A N/A 0.803±0.00 N/A N/A N/A N/A 11.933±0.00 2.710±0.00 1.675±0.00
ENSMUST00000189209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.730±0.00 0.474±0.00
ENSMUST00000190822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.586±0.00 N/A N/A
ENSMUST00000190936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000066456 ENSMUST00000161796 N/A 5.086±0.75 19.876±1.89 13.117±2.57 1.806±0.00 N/A N/A 1.527±0.00 0.644±0.35 N/A 0.900±0.27 6.421±2.69 1.340±0.57 1.382±0.94
ENSMUST00000162246 N/A N/A 9.975±0.08 N/A N/A N/A N/A N/A 0.469±0.11 N/A 0.608±0.23 3.805±1.51 1.085±0.30 N/A
ENSMUST00000185315 6.489±0.38 8.287±1.13 21.364±7.08 19.546±13.34 5.267±3.08 1.524±0.43 1.828±0.34 2.317±0.41 0.539±0.30 2.690±1.15 0.558±0.17 4.276±1.48 0.749±0.61 1.181±0.56
ENSMUST00000185359 N/A N/A N/A N/A N/A 7.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.390±0.00 N/A
ENSMUST00000189777 N/A N/A N/A N/A N/A N/A 1.812±0.00 2.392±0.00 0.262±0.00 2.427±0.00 N/A N/A N/A N/A
ENSMUST00000190154 N/A N/A N/A 23.015±0.00 N/A N/A N/A N/A N/A 0.875±0.00 0.547±0.00 10.740±0.00 2.603±0.00 2.326±0.00
ENSMUST00000190580 N/A N/A N/A N/A N/A N/A N/A 2.133±0.00 0.491±0.17 N/A 0.751±0.20 5.600±0.42 1.020±0.00 1.396±0.00
ENSMUST00000191105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101144 ENSMUST00000187589 N/A 1.142±0.51 N/A N/A N/A 0.380±0.00 N/A N/A 0.050±0.00 0.175±0.00 N/A 0.381±0.12 N/A 0.235±0.00

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