C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin, alpha, cardiac muscle 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068614 Actc1 10090 - 2:114047282-114053548 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090269 Actc1-001 114047282-114052887 protein_coding
  ENSMUST00000149125 Actc1-002 114051903-114053548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090269ENSMUST00000149125
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090269 0.812±0.15 0.055±0.01 167.921±22.88 3.082±2.35 15.927±15.50 2.513±1.00 10876.800±767.49 1.767±0.13 3.329±9.29 263.991±41.03 79.346±30.10 0.459±0.24 3.693±1.44 0.276±0.02
ENSMUST00000149125 N/A 0.586±0.22 N/A 0.286±0.00 N/A N/A N/A N/A N/A N/A N/A 0.220±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VH CIL_0008VH_0002 VISTA 2:113823388-114423882
CIL_0005II CIL_0005II_0003 CGP 2:114009601-114053548
CIL_0006HF CIL_0006HF_0002 CGP 2:114047282-114187024

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005884 IEA actin filament
GO:0005925 IEA focal adhesion
GO:0006200 IEA ATP catabolic process
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0017022 IEA myosin binding
GO:0030017 IEA sarcomere
GO:0030048 IEA actin filament-based movement
GO:0030240 IMP skeletal muscle thin filament assembly
GO:0031032 IMP actomyosin structure organization
GO:0031674 IDA I band
GO:0033275 IEA actin-myosin filament sliding
GO:0042493 IEA response to drug
GO:0042643 IEA actomyosin, actin portion
GO:0043066 IMP negative regulation of apoptotic process
GO:0045471 IEA response to ethanol
GO:0055003 IMP cardiac myofibril assembly
GO:0055008 IMP cardiac muscle tissue morphogenesis
GO:0060047 IEA heart contraction
GO:0060048 IEA cardiac muscle contraction
GO:0070062 IEA extracellular vesicular exosome
GO:0070252 IMP actin-mediated cell contraction
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036371 acta1a actin, alpha 1a, skeletal muscle protein_coding Danio_rerio
ENSDARG00000037840 actc1b actin, alpha, cardiac muscle 1b protein_coding Danio_rerio
ENSDARG00000042535 actc1a actin, alpha, cardiac muscle 1a protein_coding Danio_rerio
ENSDARG00000055618 acta1b actin, alpha 1b, skeletal muscle protein_coding Danio_rerio
ENSDARG00000057911 actin, alpha, cardiac muscle 1 protein_coding Danio_rerio
ENSDARG00000076126 hm:zewp0073 actin, alpha, cardiac muscle 1 protein_coding Danio_rerio
ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 protein_coding Homo_sapiens

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