C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha, cardiac muscle 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090269 Actc1-001 ENSMUSG00000068614 10090 - 2:114047282-114052887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090269
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090269 0.812±0.15 0.055±0.01 167.921±22.88 3.082±2.35 15.927±15.50 2.513±1.00 10876.800±767.49 1.767±0.13 3.329±9.29 263.991±41.03 79.346±30.10 0.459±0.24 3.693±1.44 0.276±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VH CIL_0008VH_0002 VISTA 2:113823388-114423882
CIL_0005II CIL_0005II_0003 CGP 2:114009601-114053548
CIL_0006HF CIL_0006HF_0002 CGP 2:114047282-114187024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005884 IEA actin filament
GO:0005925 IEA focal adhesion
GO:0006200 IEA ATP catabolic process
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0017022 IEA myosin binding
GO:0030017 IEA sarcomere
GO:0030048 IEA actin filament-based movement
GO:0030240 IMP skeletal muscle thin filament assembly
GO:0031032 IMP actomyosin structure organization
GO:0031674 IDA I band
GO:0033275 IEA actin-myosin filament sliding
GO:0042493 IEA response to drug
GO:0042643 IEA actomyosin, actin portion
GO:0043066 IMP negative regulation of apoptotic process
GO:0045471 IEA response to ethanol
GO:0055003 IMP cardiac myofibril assembly
GO:0055008 IMP cardiac muscle tissue morphogenesis
GO:0060047 IEA heart contraction
GO:0060048 IEA cardiac muscle contraction
GO:0070062 IEA extracellular vesicular exosome
GO:0070252 IMP actin-mediated cell contraction
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1223
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 1138
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 1129
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 1122
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 1066
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1020
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 972
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 763
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 577
ENSDART00000135318 actb1-006 retained_intron Danio_rerio 0 298
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 298
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1110
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1886
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1038
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 979
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1146
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 929
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 898
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 497
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1110
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 918
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 907
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1146
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 887
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 898
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 628
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 891
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 689
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 636
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 375
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 726
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 333
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 717
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 532
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 592
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 398
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 756
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 887
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 231
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 364
ENST00000442912 ACTG2-010 protein_coding Homo_sapiens 0 363
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 765
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 918
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1110
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 717
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 394
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 451
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 756
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 693
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 377
ENST00000557860 ACTC1-003 processed_transcript Homo_sapiens 0 710
ENST00000560563 ACTC1-004 retained_intron Homo_sapiens 0 438
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 263
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 540
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 545
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 610
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 979
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 662
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 979
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 516
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 979
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 516
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 928
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 370
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 979
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 669
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 979

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