C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115398 Prdm6-003 ENSMUSG00000069378 10090 + 18:53551594-53575857 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115398
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115398 0.083±0.00 0.107±0.02 9.911±0.00 0.038±0.00 0.761±0.00 0.174±0.00 0.066±0.00 0.064±0.04 5.454±0.15 0.043±0.02 1.249±0.74 0.920±0.22 0.290±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LD CIL_0007LD_0003 UCNEbase 18:53312823-53553068
CIL_0004AY CIL_0004AY_0002 CGP 18:53406341-53575907
CIL_0004AX CIL_0004AX_0002 CGP 18:53464546-53744547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0022008 IDA neurogenesis
GO:0034968 IEA histone lysine methylation
GO:0042803 IDA protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051151 IMP negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122501 PRDM6 (2 of 2)-201 protein_coding Danio_rerio 0 305
ENST00000407847 PRDM6-001 protein_coding Homo_sapiens 0 1291
ENST00000427739 PRDM6-004 processed_transcript Homo_sapiens 0 268
ENST00000434521 PRDM6-003 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000464424 PRDM6-002 processed_transcript Homo_sapiens 5.00264e-43 178

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