C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: scaffold attachment factor B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182031 Safb-002 ENSMUSG00000071054 10090 + 17:56584825-56596523 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLungOvaryENSMUST00000182031
Transcript ID Adrenal Breast Lung Ovary
ENSMUST00000182031 9.097±1.70 3.896±0.00 8.140±0.00 10.660±2.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UZ CIL_0003UZ_0002 CGP 17:56560965-56606294

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252542 SAFB2-001 protein_coding Homo_sapiens 1.96182e-44 185
ENST00000292123 SAFB-003 protein_coding Homo_sapiens 0 575
ENST00000454510 SAFB-004 protein_coding Homo_sapiens 0 418
ENST00000586934 SAFB-006 processed_transcript Homo_sapiens 0 575
ENST00000588852 SAFB-002 protein_coding Homo_sapiens 0 575
ENST00000589863 SAFB-005 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000591120 SAFB2-002 nonsense_mediated_decay Homo_sapiens 8.40779e-45 185
ENST00000591666 SAFB-008 retained_intron Homo_sapiens 0 348
ENST00000592224 SAFB-001 protein_coding Homo_sapiens 0 575

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