C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scaffold attachment factor B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095224 Safb-001 ENSMUSG00000071054 10090 + 17:56585059-56606294 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095224
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095224 6.957±0.49 2.631±0.00 11.923±4.71 35.195±19.38 4.353±0.30 5.203±0.76 6.162±0.78 5.855±2.25 11.091±9.55 7.783±0.84 6.605±1.24 17.667±24.41 28.135±19.04 24.266±29.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UZ CIL_0003UZ_0002 CGP 17:56560965-56606294

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 IDA core promoter binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0030520 IMP intracellular estrogen receptor signaling pathway
GO:0040007 IMP growth
GO:0042445 IMP hormone metabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252542 SAFB2-001 protein_coding Homo_sapiens 0 387
ENST00000292123 SAFB-003 protein_coding Homo_sapiens 0 1677
ENST00000454510 SAFB-004 protein_coding Homo_sapiens 0 1655
ENST00000586934 SAFB-006 processed_transcript Homo_sapiens 0 592
ENST00000588852 SAFB-002 protein_coding Homo_sapiens 0 1655
ENST00000589863 SAFB-005 nonsense_mediated_decay Homo_sapiens 0 1663
ENST00000589925 SAFB2-008 processed_transcript Homo_sapiens 1e-21 110
ENST00000591120 SAFB2-002 nonsense_mediated_decay Homo_sapiens 8.40779e-45 185
ENST00000591666 SAFB-008 retained_intron Homo_sapiens 0 348
ENST00000592224 SAFB-001 protein_coding Homo_sapiens 0 1663
ENST00000592599 SAFB2-003 retained_intron Homo_sapiens 0 261
ENST00000592707 SAFB-009 retained_intron Homo_sapiens 0 588

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