C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scaffold attachment factor B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182378 Safb-004 ENSMUSG00000071054 10090 + 17:56597770-56606280 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182378 6.694±2.89 8.460±1.72 7.824±3.26 12.893±4.43 6.530±1.23 6.116±1.96 4.872±0.42 4.662±0.46 4.099±1.16 9.744±0.44 2.993±0.40 10.683±2.27 5.656±1.75 7.745±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UZ CIL_0003UZ_0002 CGP 17:56560965-56606294

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252542 SAFB2-001 protein_coding Homo_sapiens 0 261
ENST00000292123 SAFB-003 protein_coding Homo_sapiens 0 261
ENST00000454510 SAFB-004 protein_coding Homo_sapiens 0 261
ENST00000588852 SAFB-002 protein_coding Homo_sapiens 0 261
ENST00000589863 SAFB-005 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000589925 SAFB2-008 processed_transcript Homo_sapiens 1e-21 110
ENST00000592224 SAFB-001 protein_coding Homo_sapiens 0 261
ENST00000592599 SAFB2-003 retained_intron Homo_sapiens 0 396
ENST00000592707 SAFB-009 retained_intron Homo_sapiens 0 394

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