C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scaffold attachment factor B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182533 Safb-006 ENSMUSG00000071054 10090 + 17:56584974-56606219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182533
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182533 4.612±1.63 3.706±0.37 6.760±0.54 6.335±0.00 4.374±0.00 3.098±0.00 3.421±0.60 3.915±1.53 5.631±0.79 3.095±0.68 10.224±3.52 6.689±3.01 7.231±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UZ CIL_0003UZ_0002 CGP 17:56560965-56606294

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0030520 IMP intracellular estrogen receptor signaling pathway
GO:0040007 IMP growth
GO:0042445 IMP hormone metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252542 SAFB2-001 protein_coding Homo_sapiens 0 387
ENST00000292123 SAFB-003 protein_coding Homo_sapiens 0 1655
ENST00000454510 SAFB-004 protein_coding Homo_sapiens 0 1688
ENST00000586934 SAFB-006 processed_transcript Homo_sapiens 0 592
ENST00000588852 SAFB-002 protein_coding Homo_sapiens 0 1688
ENST00000589863 SAFB-005 nonsense_mediated_decay Homo_sapiens 0 1696
ENST00000589925 SAFB2-008 processed_transcript Homo_sapiens 3e-27 128
ENST00000591120 SAFB2-002 nonsense_mediated_decay Homo_sapiens 8.40779e-45 185
ENST00000591666 SAFB-008 retained_intron Homo_sapiens 0 348
ENST00000592224 SAFB-001 protein_coding Homo_sapiens 0 1696
ENST00000592599 SAFB2-003 retained_intron Homo_sapiens 0 261
ENST00000592707 SAFB-009 retained_intron Homo_sapiens 0 588

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