C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 1 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162961 Alkbh1-001 ENSMUSG00000079036 10090 - 12:87426169-87443839 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLungOvaryTestisENSMUST00000162961
Transcript ID Adrenal Brain Breast Lung Ovary Testis
ENSMUST00000162961 1.772±0.00 5.430±0.53 2.313±0.52 1.945±0.00 2.890±0.10 2.743±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TW CIL_0004TW_0002 CGP 12:87305058-87444017
CIL_0004TV CIL_0004TV_0002 CGP 12:87425840-87452206

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0001701 IMP in utero embryonic development
GO:0001764 IDA neuron migration
GO:0001890 IMP placenta development
GO:0003906 ISS DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IPI protein binding
GO:0005719 IDA nuclear euchromatin
GO:0005739 ISS mitochondrion
GO:0006281 ISS DNA repair
GO:0006307 ISS DNA dealkylation involved in DNA repair
GO:0008198 ISS ferrous iron binding
GO:0010468 IMP regulation of gene expression
GO:0030154 IMP cell differentiation
GO:0031175 IDA neuron projection development
GO:0042056 IDA chemoattractant activity
GO:0042245 ISS RNA repair
GO:0043524 IDA negative regulation of neuron apoptotic process
GO:0048589 IMP developmental growth
GO:0050918 IDA positive chemotaxis
GO:0070579 ISS methylcytosine dioxygenase activity
GO:0070989 ISS oxidative demethylation
GO:0080111 ISS DNA demethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216489 ALKBH1-001 protein_coding Homo_sapiens 0 1188
ENST00000555100 ALKBH1-003 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000557057 ALKBH1-002 nonsense_mediated_decay Homo_sapiens 0 833

Loading