C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 1 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162247 Alkbh1-004 ENSMUSG00000079036 10090 - 12:87428077-87443828 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryENSMUST00000162247
Transcript ID Adrenal Breast Colon Liver Ovary
ENSMUST00000162247 3.457±0.97 4.499±0.00 2.840±0.47 2.014±0.17 5.985±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TW CIL_0004TW_0002 CGP 12:87305058-87444017
CIL_0004TV CIL_0004TV_0002 CGP 12:87425840-87452206

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001764 IDA neuron migration
GO:0001890 IMP placenta development
GO:0005515 IPI protein binding
GO:0005719 IDA nuclear euchromatin
GO:0010468 IMP regulation of gene expression
GO:0030154 IMP cell differentiation
GO:0031175 IDA neuron projection development
GO:0042056 IDA chemoattractant activity
GO:0043524 IDA negative regulation of neuron apoptotic process
GO:0048589 IMP developmental growth
GO:0050918 IDA positive chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216489 ALKBH1-001 protein_coding Homo_sapiens 0 627
ENST00000555100 ALKBH1-003 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000557057 ALKBH1-002 nonsense_mediated_decay Homo_sapiens 0 627

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