C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 8 (sodium/calcium exchanger), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079055 Slc8a3 10090 - 12:81197915-81333180 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064594 Slc8a3-004 81198276-81332959 protein_coding
  ENSMUST00000085238 Slc8a3-001 81197915-81333164 protein_coding
  ENSMUST00000182208 Slc8a3-002 81199446-81333180 protein_coding
  ENSMUST00000182366 Slc8a3-005 81202397-81294674 protein_coding
  ENSMUST00000183102 Slc8a3-003 81214024-81333180 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064594ENSMUST00000085238ENSMUST00000182208ENSMUST00000182366ENSMUST00000183102
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064594 0.051±0.03 0.083±0.00 0.137±0.00 3.699±0.00 0.494±0.39 0.304±0.11 N/A 0.054±0.01 0.011±0.00 0.225±0.20 3.744±0.85 0.151±0.05 0.029±0.01 0.019±0.01
ENSMUST00000085238 0.036±0.00 N/A 0.069±0.04 2.274±0.89 0.260±0.00 N/A 0.050±0.00 0.043±0.00 0.038±0.02 0.278±0.00 5.215±0.00 0.106±0.02 0.046±0.00 0.025±0.01
ENSMUST00000182208 0.036±0.01 0.160±0.04 N/A N/A 0.716±0.48 0.273±0.09 0.058±0.05 0.045±0.02 0.020±0.01 0.285±0.12 N/A 0.233±0.12 0.015±0.00 0.008±0.00
ENSMUST00000182366 N/A N/A N/A 22.465±0.00 N/A N/A 0.142±0.00 N/A 0.089±0.05 N/A N/A 0.295±0.00 0.172±0.08 0.261±0.00
ENSMUST00000183102 0.044±0.00 N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A N/A N/A 0.099±0.00 0.036±0.01 0.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M6 CIL_0002M6_0002 CGP 12:81026808-81333180

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005432 IEA calcium:sodium antiporter activity
GO:0005739 IEA mitochondrion
GO:0005874 IEA microtubule
GO:0005886 IEA plasma membrane
GO:0005887 IC integral component of plasma membrane
GO:0006814 IEA sodium ion transport
GO:0007154 IEA cell communication
GO:0015368 IDA calcium:cation antiporter activity
GO:0021537 IEA telencephalon development
GO:0030001 IDA metal ion transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0042383 IEA sarcolemma
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0043197 IEA dendritic spine
GO:0060402 IEA calcium ion transport into cytosol
GO:0070588 IDA calcium ion transmembrane transport
GO:0071320 IEA cellular response to cAMP
GO:1990034 IEA calcium ion export from cell
GO:1990035 IEA calcium ion import into cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004931 slc8a3 solute carrier family 8 (sodium-calcium exchanger), member 3 protein_coding Danio_rerio
ENSG00000100678 SLC8A3 solute carrier family 8 (sodium/calcium exchanger), member 3 protein_coding Homo_sapiens

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