C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182208 Slc8a3-002 ENSMUSG00000079055 10090 - 12:81199446-81333180 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000182208
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000182208 0.036±0.01 0.160±0.04 0.716±0.48 0.273±0.09 0.058±0.05 0.045±0.02 0.020±0.01 0.285±0.12 0.233±0.12 0.015±0.00 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M6 CIL_0002M6_0002 CGP 12:81026808-81333180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005739 IEA mitochondrion
GO:0005874 IEA microtubule
GO:0005886 IEA plasma membrane
GO:0005887 IC integral component of plasma membrane
GO:0006814 IEA sodium ion transport
GO:0007154 IEA cell communication
GO:0015368 IDA calcium:cation antiporter activity
GO:0021537 IEA telencephalon development
GO:0030001 IDA metal ion transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0042383 IEA sarcolemma
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0043197 IEA dendritic spine
GO:0060402 IEA calcium ion transport into cytosol
GO:0070588 IDA calcium ion transmembrane transport
GO:0071320 IEA cellular response to cAMP
GO:1990034 IEA calcium ion export from cell
GO:1990035 IEA calcium ion import into cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000046800 slc8a1a-201 protein_coding Danio_rerio 0 344
ENSDART00000089803 slc8a1a-001 protein_coding Danio_rerio 0 344
ENST00000216568 SLC8A3-006 protein_coding Homo_sapiens 0 1218
ENST00000356921 SLC8A3-001 protein_coding Homo_sapiens 0 2708
ENST00000357887 SLC8A3-201 protein_coding Homo_sapiens 0 4069
ENST00000381269 SLC8A3-003 protein_coding Homo_sapiens 0 3880
ENST00000394330 SLC8A3-007 protein_coding Homo_sapiens 0 1216
ENST00000494208 SLC8A3-002 nonsense_mediated_decay Homo_sapiens 0 2702
ENST00000528359 SLC8A3-005 protein_coding Homo_sapiens 0 3853
ENST00000533541 SLC8A3-008 protein_coding Homo_sapiens 0 741
ENST00000534137 SLC8A3-004 protein_coding Homo_sapiens 0 3611

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