C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085238 Slc8a3-001 ENSMUSG00000079055 10090 - 12:81197915-81333164 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085238
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085238 0.036±0.00 0.069±0.04 2.274±0.89 0.260±0.00 0.050±0.00 0.043±0.00 0.038±0.02 0.278±0.00 5.215±0.00 0.106±0.02 0.046±0.00 0.025±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M6 CIL_0002M6_0002 CGP 12:81026808-81333180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005432 IEA calcium:sodium antiporter activity
GO:0005887 IC integral component of plasma membrane
GO:0007154 IEA cell communication
GO:0015368 IDA calcium:cation antiporter activity
GO:0030001 IDA metal ion transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000046800 slc8a1a-201 protein_coding Danio_rerio 0 344
ENSDART00000089803 slc8a1a-001 protein_coding Danio_rerio 0 344
ENST00000216568 SLC8A3-006 protein_coding Homo_sapiens 0 1509
ENST00000356921 SLC8A3-001 protein_coding Homo_sapiens 0 4211
ENST00000357887 SLC8A3-201 protein_coding Homo_sapiens 0 3940
ENST00000381269 SLC8A3-003 protein_coding Homo_sapiens 0 4133
ENST00000394330 SLC8A3-007 protein_coding Homo_sapiens 0 1332
ENST00000494208 SLC8A3-002 nonsense_mediated_decay Homo_sapiens 0 2702
ENST00000528359 SLC8A3-005 protein_coding Homo_sapiens 0 3605
ENST00000533541 SLC8A3-008 protein_coding Homo_sapiens 0 741
ENST00000533899 SLC8A3-009 processed_transcript Homo_sapiens 4.06377e-44 182
ENST00000534137 SLC8A3-004 protein_coding Homo_sapiens 0 3825

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