C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182366 Slc8a3-005 ENSMUSG00000079055 10090 - 12:81202397-81294674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverOvaryPlacentaTestisENSMUST00000182366
Transcript ID Brain Heart Liver Ovary Placenta Testis
ENSMUST00000182366 22.465±0.00 0.142±0.00 0.089±0.05 0.295±0.00 0.172±0.08 0.261±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M6 CIL_0002M6_0002 CGP 12:81026808-81333180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005887 IC integral component of plasma membrane
GO:0015368 IDA calcium:cation antiporter activity
GO:0030001 IDA metal ion transport
GO:0070588 IDA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000046800 slc8a1a-201 protein_coding Danio_rerio 1e-39 167
ENSDART00000089803 slc8a1a-001 protein_coding Danio_rerio 1e-39 167
ENST00000216568 SLC8A3-006 protein_coding Homo_sapiens 0 704
ENST00000356921 SLC8A3-001 protein_coding Homo_sapiens 0 701
ENST00000357887 SLC8A3-201 protein_coding Homo_sapiens 0 514
ENST00000381269 SLC8A3-003 protein_coding Homo_sapiens 0 623
ENST00000394330 SLC8A3-007 protein_coding Homo_sapiens 0 523
ENST00000494208 SLC8A3-002 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000528359 SLC8A3-005 protein_coding Homo_sapiens 0 514
ENST00000533541 SLC8A3-008 protein_coding Homo_sapiens 0 523
ENST00000533899 SLC8A3-009 processed_transcript Homo_sapiens 4.06377e-44 182
ENST00000534137 SLC8A3-004 protein_coding Homo_sapiens 0 647

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