C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095899 Syne1-202 ENSMUSG00000096054 10090 - 10:5020203-5069063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095899
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095899 8.529±2.00 3.816±0.50 5.786±0.00 2.492±0.49 5.926±2.01 6.301±0.90 8.809±2.12 2.239±1.55 2.313±1.25 14.226±0.86 5.046±2.98 5.091±1.65 1.127±0.00 1.005±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EI CIL_0005EI_0002 CGP 10:4611593-5550692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005635 IDA nuclear envelope
GO:0005856 IEA cytoskeleton
GO:0030017 ISA sarcomere
GO:0040023 IMP establishment of nucleus localization
GO:0042803 IDA protein homodimerization activity
GO:0051015 IMP actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000091828 syne1b-201 protein_coding Danio_rerio 0 608
ENSDART00000148520 syne1b-001 protein_coding Danio_rerio 0 608
ENST00000341594 SYNE1-201 protein_coding Homo_sapiens 0 3055
ENST00000347037 SYNE1-004 processed_transcript Homo_sapiens 0 1611
ENST00000354674 SYNE1-027 protein_coding Homo_sapiens 0 1611
ENST00000367251 SYNE1-006 protein_coding Homo_sapiens 0 1447
ENST00000367255 SYNE1-001 protein_coding Homo_sapiens 0 3055
ENST00000367256 SYNE1-011 retained_intron Homo_sapiens 0 3055
ENST00000367257 SYNE1-033 protein_coding Homo_sapiens 0 2721
ENST00000409694 SYNE1-015 retained_intron Homo_sapiens 0 3055
ENST00000423061 SYNE1-002 protein_coding Homo_sapiens 0 1611
ENST00000460912 SYNE1-028 processed_transcript Homo_sapiens 0 1611
ENST00000476519 SYNE1-025 processed_transcript Homo_sapiens 0 630
ENST00000478916 SYNE1-017 retained_intron Homo_sapiens 0 915
ENST00000536990 SYNE1-034 processed_transcript Homo_sapiens 0 2721
ENST00000539504 SYNE1-005 protein_coding Homo_sapiens 0 3230

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