C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00003E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000161638-ENSG00000170627 CGP 9606 12:54395261-54473602
GeneTranscriptPositionBiotype
ENSG00000161638 (ITGA5)
integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 		ENST00000293379 (ITGA5-001) 54395261-54419460 protein_coding
ENST00000435631 (ITGA5-002) 54404771-54419220 nonsense_mediated_decay
ENST00000547197 (ITGA5-012) 54395895-54399913 protein_coding
ENST00000547744 (ITGA5-005) 54411908-54413428 processed_transcript
ENST00000549601 (ITGA5-010) 54396222-54398823 retained_intron
ENST00000550141 (ITGA5-007) 54403632-54404344 retained_intron
ENST00000551564 (ITGA5-008) 54402081-54403172 retained_intron
ENST00000551861 (ITGA5-006) 54403916-54404629 retained_intron
ENST00000552387 (ITGA5-013) 54397366-54400858 retained_intron
ENST00000552431 (ITGA5-011) 54397271-54399913 retained_intron
ENST00000552564 (ITGA5-004) 54395261-54406116 retained_intron
ENST00000552583 (ITGA5-009) 54401560-54402272 retained_intron
ENST00000553071 (ITGA5-003) 54405194-54419127 nonsense_mediated_decay
ENSG00000170627 (GTSF1)
gametocyte specific factor 1 		ENST00000305879 (GTSF1-001) 54455957-54473599 protein_coding
ENST00000546575 (GTSF1-005) 54456139-54463333 retained_intron
ENST00000546739 (GTSF1-003) 54464703-54473602 retained_intron
ENST00000546931 (GTSF1-006) 54455950-54473549 nonsense_mediated_decay
ENST00000548538 (GTSF1-008) 54464697-54468947 processed_transcript
ENST00000549083 (GTSF1-009) 54468925-54472644 processed_transcript
ENST00000552336 (GTSF1-007) 54455961-54459602 processed_transcript
ENST00000552395 (GTSF1-004) 54455960-54473570 processed_transcript
ENST00000552397 (GTSF1-002) 54455954-54472627 protein_coding
ENSG00000257477 (LINC01154)
long intergenic non-protein coding RNA 1154 		ENST00000548617 (LINC01154-001) 54428303-54429403 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_00003E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000555-ENSMUSG00000022487 CGP 10090 15:103344289-103430470
GeneTranscriptPositionBiotype
ENSMUSG00000000555 (Itga5)
integrin alpha 5 (fibronectin receptor alpha) 		ENSMUST00000023128 (Itga5-201) 103344289-103366763 protein_coding
ENSMUSG00000022487 (Gtsf1)
gametocyte specific factor 1 		ENSMUST00000023129 (Gtsf1-001) 103402405-103430470 protein_coding
ENSMUST00000123724 (Gtsf1-009) 103402458-103428606 protein_coding
ENSMUST00000129837 (Gtsf1-006) 103419968-103430244 protein_coding
ENSMUST00000136480 (Gtsf1-002) 103402458-103428500 protein_coding
ENSMUST00000141364 (Gtsf1-005) 103402514-103430379 protein_coding
ENSMUST00000146675 (Gtsf1-007) 103402495-103430344 protein_coding
ENSMUST00000146736 (Gtsf1-008) 103402461-103429562 protein_coding
ENSMUST00000147389 (Gtsf1-003) 103409626-103430409 protein_coding
ENSMUST00000153930 (Gtsf1-004) 103402483-103430349 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003E_0001ENSG00000161638ENST00000293379ENST00000435631ENST00000547197ENST00000547744ENST00000549601ENST00000550141ENST00000551564ENST00000551861ENST00000552387ENST00000552431ENST00000552564ENST00000552583ENST00000553071ENSG00000170627ENST00000305879ENST00000546575ENST00000546739ENST00000546931ENST00000548538ENST00000549083ENST00000552336ENST00000552395ENST00000552397ENSG00000257477ENST00000548617CIL_00003E_0002ENSMUSG00000000555ENSMUST00000023128ENSMUSG00000022487ENSMUST00000023129ENSMUST00000123724ENSMUST00000129837ENSMUST00000136480ENSMUST00000141364ENSMUST00000146675ENSMUST00000146736ENSMUST00000147389ENSMUST00000153930
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003E_0001ENSG00000161638ENST00000293379ENST00000550141ENST00000552387ENST00000552564ENSG00000170627ENST00000305879ENST00000546575ENST00000546931ENST00000548538ENST00000552395ENST00000552397ENSG00000257477ENST00000548617CIL_00003E_0002ENSMUSG00000000555ENSMUST00000023128ENSMUSG00000022487ENSMUST00000023129ENSMUST00000129837ENSMUST00000136480ENSMUST00000141364ENSMUST00000146675ENSMUST00000146736ENSMUST00000147389ENSMUST00000153930
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000161638 ENST00000293379 41.031±0.00 36.868±0.00 0.973±0.00 2.650±2.30 11.762±6.05 28.705±25.23 9.219±6.97 9.119±5.48 18.883±9.85 62.113±56.50 6.993±4.94 16.472±8.78 138.837±52.44 8.459±7.58
ENST00000435631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550141 N/A N/A N/A 0.905±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552387 N/A N/A N/A 0.242±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552564 N/A N/A 0.201±0.00 N/A 1.587±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.355±0.00
ENST00000552583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170627 ENST00000305879 N/A N/A N/A N/A 0.167±0.00 N/A N/A N/A N/A N/A N/A 0.247±0.11 9.262±2.93 92.728±1.93
ENST00000546575 N/A 0.287±0.00 N/A N/A N/A 0.191±0.00 N/A N/A N/A 0.133±0.00 N/A 0.136±0.01 N/A N/A
ENST00000546739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546931 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548538 N/A N/A N/A N/A N/A 0.613±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552395 N/A 1.137±0.00 N/A N/A N/A N/A 0.250±0.20 N/A 0.111±0.00 N/A N/A N/A 7.644±0.00 77.996±0.00
ENST00000552397 0.013±0.00 0.109±0.00 N/A 0.066±0.00 0.040±0.03 N/A 0.042±0.00 0.007±0.00 0.028±0.00 0.022±0.00 N/A N/A N/A N/A
ENSG00000257477 ENST00000548617 0.130±0.00 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.193±0.10 0.129±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000555 ENSMUST00000023128 16.292±5.94 14.276±0.84 53.156±10.07 1.797±0.77 8.834±1.81 22.205±2.56 11.804±1.60 2.614±0.88 8.274±1.32 13.043±1.78 1.853±0.49 18.560±5.15 48.649±21.19 0.256±0.19
ENSMUSG00000022487 ENSMUST00000023129 N/A N/A N/A 0.010±0.00 N/A N/A 0.153±0.07 0.084±0.01 N/A N/A N/A 0.744±0.41 0.027±0.00 126.556±16.82
ENSMUST00000123724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129837 N/A N/A N/A 0.051±0.00 0.140±0.00 N/A N/A 0.124±0.00 0.019±0.00 N/A N/A 0.496±0.00 0.066±0.00 N/A
ENSMUST00000136480 N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.260±0.00 N/A
ENSMUST00000141364 N/A N/A N/A 0.013±0.00 N/A 0.102±0.00 N/A N/A 0.006±0.00 N/A N/A 5.160±3.83 0.418±0.00 185.941±200.38
ENSMUST00000146675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.897±0.45 N/A N/A
ENSMUST00000146736 N/A N/A N/A N/A N/A N/A 0.193±0.08 0.118±0.00 0.006±0.00 N/A N/A 1.249±0.46 0.037±0.00 N/A
ENSMUST00000147389 N/A N/A N/A N/A N/A N/A 0.163±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.534±0.51 0.077±0.05 44.651±4.52

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