C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_00003E_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000161638-ENSG00000170627 | CGP | 9606 | 12:54395261-54473602  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000161638  (ITGA5)integrin, alpha 5 (fibronectin receptor, alpha polypeptide) |
ENST00000293379 (ITGA5-001)
|
54395261-54419460 | protein_coding | |
|
ENST00000435631 (ITGA5-002)
|
54404771-54419220 | nonsense_mediated_decay | ||
|
ENST00000547197 (ITGA5-012)
|
54395895-54399913 | protein_coding | ||
|
ENST00000547744 (ITGA5-005)
|
54411908-54413428 | processed_transcript | ||
|
ENST00000549601 (ITGA5-010)
|
54396222-54398823 | retained_intron | ||
|
ENST00000550141 (ITGA5-007)
|
54403632-54404344 | retained_intron | ||
|
ENST00000551564 (ITGA5-008)
|
54402081-54403172 | retained_intron | ||
|
ENST00000551861 (ITGA5-006)
|
54403916-54404629 | retained_intron | ||
|
ENST00000552387 (ITGA5-013)
|
54397366-54400858 | retained_intron | ||
|
ENST00000552431 (ITGA5-011)
|
54397271-54399913 | retained_intron | ||
|
ENST00000552564 (ITGA5-004)
|
54395261-54406116 | retained_intron | ||
|
ENST00000552583 (ITGA5-009)
|
54401560-54402272 | retained_intron | ||
|
ENST00000553071 (ITGA5-003)
|
54405194-54419127 | nonsense_mediated_decay | ||
|
ENSG00000170627 (GTSF1) gametocyte specific factor 1 |
ENST00000305879 (GTSF1-001)
|
54455957-54473599 | protein_coding | |
|
ENST00000546575 (GTSF1-005)
|
54456139-54463333 | retained_intron | ||
|
ENST00000546739 (GTSF1-003)
|
54464703-54473602 | retained_intron | ||
|
ENST00000546931 (GTSF1-006)
|
54455950-54473549 | nonsense_mediated_decay | ||
|
ENST00000548538 (GTSF1-008)
|
54464697-54468947 | processed_transcript | ||
|
ENST00000549083 (GTSF1-009)
|
54468925-54472644 | processed_transcript | ||
|
ENST00000552336 (GTSF1-007)
|
54455961-54459602 | processed_transcript | ||
|
ENST00000552395 (GTSF1-004)
|
54455960-54473570 | processed_transcript | ||
|
ENST00000552397 (GTSF1-002)
|
54455954-54472627 | protein_coding | ||
|
ENSG00000257477 (LINC01154) long intergenic non-protein coding RNA 1154 |
ENST00000548617 (LINC01154-001)
|
54428303-54429403 | lincRNA | |
| CIL_00003E_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000000555-ENSMUSG00000022487 | CGP | 10090 | 15:103344289-103430470 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000000555 (Itga5) integrin alpha 5 (fibronectin receptor alpha) |
ENSMUST00000023128 (Itga5-201)
|
103344289-103366763 | protein_coding | |
|
ENSMUSG00000022487 (Gtsf1) gametocyte specific factor 1 |
ENSMUST00000023129 (Gtsf1-001)
|
103402405-103430470 | protein_coding | |
|
ENSMUST00000123724 (Gtsf1-009)
|
103402458-103428606 | protein_coding | ||
|
ENSMUST00000129837 (Gtsf1-006)
|
103419968-103430244 | protein_coding | ||
|
ENSMUST00000136480 (Gtsf1-002)
|
103402458-103428500 | protein_coding | ||
|
ENSMUST00000141364 (Gtsf1-005)
|
103402514-103430379 | protein_coding | ||
|
ENSMUST00000146675 (Gtsf1-007)
|
103402495-103430344 | protein_coding | ||
|
ENSMUST00000146736 (Gtsf1-008)
|
103402461-103429562 | protein_coding | ||
|
ENSMUST00000147389 (Gtsf1-003)
|
103409626-103430409 | protein_coding | ||
|
ENSMUST00000153930 (Gtsf1-004)
|
103402483-103430349 | protein_coding | ||
Expression Patterns
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