C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000088_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061718-ENSDARG00000055875 CGP 7955 19:33201414-33394991
GeneTranscriptPositionBiotype
ENSDARG00000055875 (pag1)
ZDB-PUB-030905-1 		ENSDART00000078268 (pag1-201) 33296140-33319657 protein_coding
ENSDART00000134934 (pag1-001) 33295969-33394958 protein_coding
ENSDART00000151407 (pag1-002) 33323831-33394991 processed_transcript
ENSDARG00000061718 (znf704)
zinc finger protein 704 		ENSDART00000088358 (znf704-001) 33201414-33286985 protein_coding
CIL_000088_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164684-ENSG00000076641 CGP 9606 8:80628451-81112068
GeneTranscriptPositionBiotype
ENSG00000076641 (PAG1)
phosphoprotein membrane anchor with glycosphingolipid microdomains 1 		ENST00000220597 (PAG1-001) 80967810-81112068 protein_coding
ENST00000519326 (PAG1-005) 81029791-81070176 processed_transcript
ENST00000522811 (PAG1-003) 80985228-80987534 retained_intron
ENST00000523463 (PAG1-004) 80970291-80975780 processed_transcript
ENSG00000164684 (ZNF704)
zinc finger protein 704 		ENST00000327835 (ZNF704-001) 80628451-80874781 protein_coding
ENST00000517379 (ZNF704-006) 80638534-80640695 processed_transcript
ENST00000517986 (ZNF704-005) 80658668-80659664 processed_transcript
ENST00000519936 (ZNF704-003) 80670593-80873665 protein_coding
ENST00000520336 (ZNF704-002) 80665067-80814259 processed_transcript
ENST00000522040 (ZNF704-004) 80664842-80673339 processed_transcript
ENSG00000212429 (RNU11-6P)
RNA, U11 small nuclear 6, pseudogene 		ENST00000391127 (RNU11-6P-201) 80749561-80749693 snRNA
ENSG00000243951 (RN7SL308P)
RNA, 7SL, cytoplasmic 308, pseudogene 		ENST00000464971 (RN7SL308P-201) 80776666-80776962 misc_RNA
ENSG00000253516 (HMGB1P41)
high mobility group box 1 pseudogene 41 		ENST00000520234 (HMGB1P41-001) 80812142-80812581 processed_pseudogene
ENSG00000254060 (RP11-172E10.1)
 ENST00000518302 (RP11-172E10.1-001) 81036964-81040831 lincRNA
ENSG00000254177 (RP11-1149M10.1)
 ENST00000519107 (RP11-1149M10.1-001) 81058523-81067744 lincRNA
ENSG00000254331 (CKS1BP7)
CDC28 protein kinase regulatory subunit 1B pseudogene 7 		ENST00000522230 (CKS1BP7-001) 80644939-80645173 processed_pseudogene
CIL_000088_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040209-ENSMUSG00000027508 CGP 10090 3:9427011-9833679
GeneTranscriptPositionBiotype
ENSMUSG00000027508 (Pag1)
phosphoprotein associated with glycosphingolipid microdomains 1 		ENSMUST00000108384 (Pag1-003) 9691898-9833630 protein_coding
ENSMUST00000159497 (Pag1-002) 9827436-9833630 processed_transcript
ENSMUST00000159825 (Pag1-004) 9692767-9705002 retained_intron
ENSMUST00000161949 (Pag1-001) 9687479-9833679 protein_coding
ENSMUST00000163022 (Pag1-005) 9752074-9833363 retained_intron
ENSMUSG00000040209 (Zfp704)
zinc finger protein 704 		ENSMUST00000041124 (Zfp704-201) 9427011-9610085 protein_coding
ENSMUSG00000089794 (Gm16337)
predicted gene 16337 		ENSMUST00000160368 (Gm16337-001) 9757607-9786142 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000088_0001ENSDARG00000055875ENSDART00000078268ENSDART00000134934ENSDART00000151407ENSDARG00000061718ENSDART00000088358CIL_000088_0002ENSG00000076641ENST00000220597ENST00000519326ENST00000522811ENST00000523463ENSG00000164684ENST00000327835ENST00000517379ENST00000517986ENST00000519936ENST00000520336ENST00000522040ENSG00000212429ENST00000391127ENSG00000243951ENST00000464971ENSG00000253516ENST00000520234ENSG00000254060ENST00000518302ENSG00000254177ENST00000519107ENSG00000254331ENST00000522230CIL_000088_0003ENSMUSG00000027508ENSMUST00000108384ENSMUST00000159497ENSMUST00000159825ENSMUST00000161949ENSMUST00000163022ENSMUSG00000040209ENSMUST00000041124ENSMUSG00000089794ENSMUST00000160368
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000088_0001ENSDARG00000055875ENSDART00000078268ENSDART00000134934ENSDART00000151407ENSDARG00000061718ENSDART00000088358CIL_000088_0002ENSG00000076641ENST00000220597ENSG00000164684ENST00000327835ENSG00000212429ENST00000391127ENSG00000243951ENST00000464971ENSG00000253516ENST00000520234ENSG00000254060ENST00000518302ENSG00000254177ENST00000519107ENSG00000254331ENST00000522230CIL_000088_0003ENSMUSG00000027508ENSMUST00000108384ENSMUST00000159497ENSMUST00000161949ENSMUSG00000040209ENSMUST00000041124ENSMUSG00000089794ENSMUST00000160368
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055875 ENSDART00000078268 N/A N/A N/A N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A N/A N/A
ENSDART00000134934 N/A N/A N/A 8.850±0.00 N/A N/A 1.684±0.24 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151407 N/A N/A N/A N/A N/A N/A N/A N/A 0.358±0.00 N/A N/A N/A N/A N/A
ENSDARG00000061718 ENSDART00000088358 N/A N/A N/A 1.149±0.00 N/A N/A 0.490±0.22 N/A 0.108±0.00 N/A 0.098±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076641 ENST00000220597 1.559±0.00 2.324±0.00 0.180±0.00 1.680±0.51 0.893±0.19 1.526±0.54 1.143±0.30 1.317±0.18 1.137±0.44 3.643±0.00 0.261±0.05 1.703±0.65 2.723±0.27 0.445±0.28
ENST00000519326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164684 ENST00000327835 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00 N/A 0.076±0.00 N/A 0.235±0.00
ENST00000517379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212429 ENST00000391127 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.466±0.00 N/A N/A N/A N/A
ENSG00000243951 ENST00000464971 N/A 0.118±0.00 0.669±0.00 0.065±0.00 0.511±0.27 1.732±0.00 N/A N/A 0.347±0.00 0.283±0.00 N/A 1.748±0.00 N/A 0.055±0.00
ENSG00000253516 ENST00000520234 0.214±0.00 N/A 7.145±0.00 1.543±1.32 2.479±2.38 1.034±0.89 0.329±0.21 0.096±0.00 1.835±0.00 1.819±1.52 1.007±0.00 1.404±2.18 0.089±0.04 0.321±0.00
ENSG00000254060 ENST00000518302 N/A N/A N/A N/A N/A N/A N/A 0.415±0.00 0.407±0.00 N/A N/A 0.057±0.00 N/A 0.075±0.00
ENSG00000254177 ENST00000519107 N/A 0.185±0.00 N/A 0.383±0.00 1.984±0.00 N/A 0.056±0.00 N/A 0.886±0.00 N/A N/A N/A N/A N/A
ENSG00000254331 ENST00000522230 N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A 0.667±0.00 3.097±0.00 N/A 5.678±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027508 ENSMUST00000108384 N/A N/A N/A N/A N/A 0.917±0.12 N/A N/A N/A N/A N/A 0.465±0.00 N/A N/A
ENSMUST00000159497 N/A 3.434±0.68 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161949 1.615±0.17 4.668±1.28 2.432±0.30 2.087±1.03 4.992±1.94 4.125±0.63 0.589±0.16 1.267±0.24 0.944±0.30 10.690±1.62 0.508±0.25 1.574±0.73 1.463±0.59 0.617±0.35
ENSMUST00000163022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040209 ENSMUST00000041124 5.728±3.26 1.997±0.28 1.359±0.35 4.475±2.19 2.895±0.51 2.710±1.17 1.496±0.52 6.821±0.65 0.763±0.31 6.478±0.23 0.640±0.07 6.057±1.37 1.577±0.74 0.601±0.30
ENSMUSG00000089794 ENSMUST00000160368 0.149±0.00 0.810±0.41 0.071±0.05 0.035±0.02 0.225±0.09 0.256±0.17 N/A 0.142±0.00 0.030±0.01 0.330±0.21 N/A 0.232±0.16 0.035±0.01 0.050±0.00

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