C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000DM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196083-ENSG00000205835 CGP 9606 3:190514051-190892429
GeneTranscriptPositionBiotype
ENSG00000196083 (IL1RAP)
interleukin 1 receptor accessory protein 		ENST00000072516 (IL1RAP-001) 190514051-190651519 protein_coding
ENST00000317757 (IL1RAP-006) 190514102-190659750 protein_coding
ENST00000342550 (IL1RAP-009) 190514102-190651512 nonsense_mediated_decay
ENST00000412080 (IL1RAP-017) 190615308-190629732 protein_coding
ENST00000412504 (IL1RAP-201) 190563941-190651518 protein_coding
ENST00000413869 (IL1RAP-004) 190514102-190651512 nonsense_mediated_decay
ENST00000422485 (IL1RAP-003) 190514098-190630285 protein_coding
ENST00000422625 (IL1RAP-010) 190514087-190604402 protein_coding
ENST00000422940 (IL1RAP-008) 190514102-190630285 protein_coding
ENST00000434491 (IL1RAP-007) 190514102-190630244 protein_coding
ENST00000439062 (IL1RAP-002) 190514059-190648823 protein_coding
ENST00000443369 (IL1RAP-202) 190564183-190657196 protein_coding
ENST00000447382 (IL1RAP-005) 190514059-190651512 protein_coding
ENST00000453359 (IL1RAP-016) 190563446-190609079 protein_coding
ENST00000461629 (IL1RAP-012) 190514108-190564517 retained_intron
ENST00000465496 (IL1RAP-011) 190514096-190519030 processed_transcript
ENST00000473566 (IL1RAP-013) 190514119-190564668 retained_intron
ENST00000476929 (IL1RAP-014) 190516219-190520560 processed_transcript
ENST00000482913 (IL1RAP-015) 190555864-190564418 retained_intron
ENSG00000205835 (GMNC)
geminin coiled-coil domain containing 		ENST00000442080 (GMNC-001) 190852878-190862615 protein_coding
ENST00000456552 (GMNC-002) 190857790-190862676 nonsense_mediated_decay
ENST00000479491 (GMNC-004) 190855644-190892429 processed_transcript
ENST00000495042 (GMNC-003) 190852877-190858060 retained_intron
ENSG00000214147 (RP11-332P22.2)
 ENST00000397646 (RP11-332P22.2-001) 190830965-190832173 processed_pseudogene
ENSG00000223117 (RN7SKP296)
RNA, 7SK small nuclear pseudogene 296 		ENST00000411185 (RN7SKP296-201) 190642163-190642503 misc_RNA
ENSG00000228730 (RP11-95L3.2)
 ENST00000438156 (RP11-95L3.2-001) 190697923-190698848 lincRNA
ENSG00000231047 (GCNT1P3)
glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 3 		ENST00000450607 (GCNT1P3-001) 190624595-190625169 processed_pseudogene
ENSG00000232610 (CCT6P4)
chaperonin containing TCP1, subunit 6 (zeta) pseudogene 4 		ENST00000430443 (CCT6P4-001) 190714811-190716399 processed_pseudogene
CIL_0000DM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022514-ENSMUSG00000068428 CGP 10090 16:26581704-26989974
GeneTranscriptPositionBiotype
ENSMUSG00000022514 (Il1rap)
interleukin 1 receptor accessory protein 		ENSMUST00000023156 (Il1rap-004) 26581757-26717744 protein_coding
ENSMUST00000096129 (Il1rap-001) 26581704-26725264 protein_coding
ENSMUST00000166294 (Il1rap-002) 26581742-26724353 protein_coding
ENSMUST00000173136 (Il1rap-003) 26722434-26730117 nonsense_mediated_decay
ENSMUST00000174171 (Il1rap-006) 26624156-26715068 nonsense_mediated_decay
ENSMUST00000174202 (Il1rap-005) 26581753-26702356 protein_coding
ENSMUST00000174644 (Il1rap-007) 26727042-26728228 processed_transcript
ENSMUSG00000068428 (Gmnc)
geminin coiled-coil domain containing 		ENSMUST00000089832 (Gmnc-201) 26957236-26989974 protein_coding
ENSMUSG00000092545 (Gm20319)
predicted gene, 20319 		ENSMUST00000172522 (Gm20319-002) 26714446-26755491 processed_transcript
ENSMUST00000173291 (Gm20319-001) 26729919-26755502 processed_transcript
ENSMUST00000174385 (Gm20319-003) 26714744-26755502 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000DM_0001ENSG00000196083ENST00000072516ENST00000317757ENST00000342550ENST00000412080ENST00000412504ENST00000413869ENST00000422485ENST00000422625ENST00000422940ENST00000434491ENST00000439062ENST00000443369ENST00000447382ENST00000453359ENST00000461629ENST00000465496ENST00000473566ENST00000476929ENST00000482913ENSG00000205835ENST00000442080ENST00000456552ENST00000479491ENST00000495042ENSG00000214147ENST00000397646ENSG00000223117ENST00000411185ENSG00000228730ENST00000438156ENSG00000231047ENST00000450607ENSG00000232610ENST00000430443CIL_0000DM_0002ENSMUSG00000022514ENSMUST00000023156ENSMUST00000096129ENSMUST00000166294ENSMUST00000173136ENSMUST00000174171ENSMUST00000174202ENSMUST00000174644ENSMUSG00000068428ENSMUST00000089832ENSMUSG00000092545ENSMUST00000172522ENSMUST00000173291ENSMUST00000174385
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000DM_0001ENSG00000196083ENST00000072516ENST00000342550ENST00000412080ENST00000412504ENST00000413869ENST00000422940ENST00000434491ENST00000439062ENST00000443369ENST00000447382ENST00000453359ENST00000465496ENST00000476929ENSG00000205835ENST00000442080ENST00000456552ENST00000479491ENST00000495042ENSG00000214147ENST00000397646ENSG00000223117ENST00000411185ENSG00000228730ENST00000438156ENSG00000231047ENST00000450607ENSG00000232610ENST00000430443CIL_0000DM_0002ENSMUSG00000022514ENSMUST00000023156ENSMUST00000096129ENSMUST00000173136ENSMUST00000174202ENSMUST00000174644ENSMUSG00000068428ENSMUST00000089832ENSMUSG00000092545ENSMUST00000172522ENSMUST00000174385
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196083 ENST00000072516 0.709±0.00 N/A N/A 0.696±0.00 0.503±0.00 0.870±0.00 0.434±0.00 N/A N/A 1.928±0.00 N/A 3.057±2.11 3.363±0.07 0.296±0.00
ENST00000317757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000342550 N/A N/A 0.584±0.00 N/A N/A 0.290±0.00 N/A 0.172±0.00 N/A N/A 0.170±0.00 N/A N/A N/A
ENST00000412080 N/A N/A N/A N/A N/A N/A 0.933±0.00 19.980±0.00 N/A N/A N/A 10.347±0.00 24.765±0.00 0.378±0.00
ENST00000412504 N/A N/A N/A N/A N/A N/A N/A 2.962±0.00 0.236±0.00 N/A N/A N/A N/A N/A
ENST00000413869 N/A N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A N/A N/A N/A N/A N/A
ENST00000422485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422940 N/A N/A N/A N/A N/A N/A N/A 5.319±0.00 2.382±2.00 1.420±0.00 0.074±0.00 N/A 4.284±1.36 N/A
ENST00000434491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A
ENST00000439062 N/A N/A N/A N/A N/A 0.612±0.00 N/A N/A 0.409±0.00 0.934±0.00 N/A 5.824±0.00 N/A N/A
ENST00000443369 N/A N/A N/A 1.407±0.55 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447382 0.740±0.00 0.747±0.00 N/A 1.295±0.00 0.360±0.00 0.224±0.00 0.524±0.00 N/A 2.658±0.00 2.451±0.00 N/A 2.787±3.13 6.016±1.80 0.740±0.00
ENST00000453359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.803±0.00 N/A N/A N/A
ENST00000461629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465496 N/A N/A N/A N/A 1.459±0.00 N/A N/A N/A N/A N/A 0.246±0.00 N/A N/A N/A
ENST00000473566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476929 N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 0.151±0.00 N/A 0.149±0.00 1.088±0.00 N/A
ENST00000482913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205835 ENST00000442080 0.001±0.00 N/A N/A 0.085±0.06 N/A N/A 0.079±0.00 1.249±0.00 0.562±0.00 N/A N/A 0.032±0.00 N/A 0.321±0.06
ENST00000456552 N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A 0.355±0.00
ENST00000479491 N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A 0.640±0.00
ENST00000495042 0.008±0.00 N/A N/A 0.043±0.00 N/A N/A 0.053±0.00 N/A N/A N/A N/A 0.044±0.00 0.032±0.01 N/A
ENSG00000214147 ENST00000397646 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.104±0.03
ENSG00000223117 ENST00000411185 0.189±0.00 N/A N/A 0.102±0.00 0.146±0.00 0.136±0.00 N/A 0.272±0.00 0.548±0.00 0.257±0.00 N/A 0.174±0.03 N/A 0.181±0.00
ENSG00000228730 ENST00000438156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.22
ENSG00000231047 ENST00000450607 0.052±0.00 0.132±0.00 N/A N/A 0.214±0.00 0.073±0.00 N/A 3.999±0.00 N/A 1.018±0.82 N/A 0.220±0.11 0.126±0.05 0.067±0.00
ENSG00000232610 ENST00000430443 N/A N/A N/A 0.020±0.00 0.007±0.00 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A 0.028±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022514 ENSMUST00000023156 0.674±0.40 0.905±0.10 2.284±0.05 1.226±0.23 1.197±0.71 0.895±0.49 0.765±0.04 1.197±0.07 1.055±0.92 2.949±0.74 0.445±0.08 1.448±0.60 0.928±0.30 0.425±0.20
ENSMUST00000096129 N/A N/A N/A 0.589±0.42 N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A
ENSMUST00000166294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173136 N/A N/A N/A 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174202 0.563±0.00 1.138±0.25 N/A N/A 0.929±0.12 1.577±0.54 N/A 0.618±0.06 21.771±24.20 2.747±0.00 N/A 1.686±0.50 0.421±0.17 N/A
ENSMUST00000174644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.580±0.00
ENSMUSG00000068428 ENSMUST00000089832 0.025±0.01 0.037±0.00 0.013±0.01 0.063±0.00 0.028±0.01 0.038±0.00 0.053±0.03 0.019±0.01 0.006±0.00 1.016±0.00 0.010±0.00 0.429±0.28 0.003±0.00 0.066±0.03
ENSMUSG00000092545 ENSMUST00000172522 N/A N/A N/A N/A N/A N/A N/A N/A 37.264±0.00 N/A N/A 1.647±0.00 N/A 0.404±0.00
ENSMUST00000173291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.095±0.00 3.437±0.47 1.094±0.00

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