C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000091106-ENSG00000119820 CGP 9606 2:32224453-32316594
GeneTranscriptPositionBiotype
ENSG00000091106 (NLRC4)
NLR family, CARD domain containing 4 		ENST00000342905 (NLRC4-003) 32224455-32265732 protein_coding
ENST00000360906 (NLRC4-002) 32224453-32265732 protein_coding
ENST00000402280 (NLRC4-004) 32224454-32264880 protein_coding
ENST00000404025 (NLRC4-001) 32224456-32265854 protein_coding
ENSG00000119820 (YIPF4)
Yip1 domain family, member 4 		ENST00000238831 (YIPF4-001) 32277910-32316594 protein_coding
ENST00000437765 (YIPF4-003) 32278231-32305866 nonsense_mediated_decay
ENST00000441084 (YIPF4-004) 32301443-32307362 protein_coding
ENST00000495355 (YIPF4-002) 32278129-32290920 retained_intron
CIL_0000MY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039193-ENSMUSG00000024072 CGP 10090 17:74426295-74500277
GeneTranscriptPositionBiotype
ENSMUSG00000024072 (Yipf4)
Yip1 domain family, member 4 		ENSMUST00000024873 (Yipf4-201) 74489493-74500277 protein_coding
ENSMUSG00000039193 (Nlrc4)
NLR family, CARD domain containing 4 		ENSMUST00000052124 (Nlrc4-201) 74426295-74459108 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MY_0001ENSG00000091106ENST00000342905ENST00000360906ENST00000402280ENST00000404025ENSG00000119820ENST00000238831ENST00000437765ENST00000441084ENST00000495355CIL_0000MY_0002ENSMUSG00000024072ENSMUST00000024873ENSMUSG00000039193ENSMUST00000052124
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MY_0001ENSG00000091106ENST00000342905ENST00000360906ENST00000402280ENST00000404025ENSG00000119820ENST00000238831ENST00000437765CIL_0000MY_0002ENSMUSG00000024072ENSMUST00000024873ENSMUSG00000039193ENSMUST00000052124
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091106 ENST00000342905 0.316±0.00 0.942±0.00 0.035±0.00 0.199±0.00 0.204±0.00 N/A N/A 0.327±0.05 N/A 0.376±0.00 N/A N/A N/A N/A
ENST00000360906 0.281±0.00 N/A N/A N/A 0.344±0.00 0.178±0.00 0.408±0.00 0.235±0.07 N/A 0.412±0.00 N/A 0.215±0.08 0.250±0.01 0.194±0.09
ENST00000402280 N/A N/A N/A 0.083±0.00 0.495±0.00 N/A N/A N/A 0.194±0.14 1.798±0.00 N/A 0.225±0.00 0.665±0.19 N/A
ENST00000404025 0.368±0.00 0.111±0.00 N/A N/A N/A N/A 0.123±0.00 N/A 0.243±0.00 N/A N/A N/A N/A N/A
ENSG00000119820 ENST00000238831 2.582±0.00 4.034±0.00 1.057±0.00 3.750±1.73 2.551±1.03 2.654±0.96 2.154±1.21 2.599±1.05 1.966±0.02 1.737±0.17 1.279±0.78 2.794±0.46 1.817±0.37 2.735±0.62
ENST00000437765 9.885±0.00 N/A 6.822±0.00 12.130±0.00 11.209±2.04 13.338±5.26 10.265±4.38 10.080±0.54 9.353±3.01 11.782±1.63 5.416±1.35 13.125±3.30 6.579±2.03 10.700±2.40
ENST00000441084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024072 ENSMUST00000024873 15.796±3.34 175.856±25.74 17.044±2.32 8.180±2.78 44.059±35.18 58.355±18.38 8.563±0.87 18.256±9.34 11.904±3.90 50.653±23.35 5.865±0.22 77.223±43.78 12.136±4.46 7.170±3.22
ENSMUSG00000039193 ENSMUST00000052124 0.185±0.05 0.101±0.05 0.085±0.00 0.029±0.01 0.481±0.23 2.720±0.83 0.083±0.03 0.115±0.07 0.101±0.09 0.372±0.11 0.043±0.03 0.174±0.08 0.165±0.10 0.133±0.00

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