C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PBX/knotted 1 homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000291547 PKNOX1-001 ENSG00000160199 9606 + 21:42974510-43033582 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000291547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000291547 2.049±0.00 2.789±0.00 1.057±0.00 1.702±0.03 1.278±0.08 2.075±1.11 0.821±0.34 1.445±1.10 1.350±0.21 2.082±0.00 1.310±0.74 3.368±1.21 2.380±0.55 5.726±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013D CIL_00013D_0002 CGP 21:42879644-43033931
CIL_0000D3 CIL_0000D3_0001 CGP 21:42974510-43076943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0030097 IEA hemopoiesis
GO:0030217 IEA T cell differentiation
GO:0030218 IEA erythrocyte differentiation
GO:0043010 IEA camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097352 Pknox1-001 protein_coding Mus_musculus 0 1775
ENSMUST00000176701 Pknox1-004 protein_coding Mus_musculus 0 1618
ENSMUST00000175806 Pknox1-003 protein_coding Mus_musculus 0 1618
ENSMUST00000176895 Pknox1-002 retained_intron Mus_musculus 0 455
ENSMUST00000176513 Pknox1-007 retained_intron Mus_musculus 0 311
ENSDART00000053210 pknox1.1-001 protein_coding Danio_rerio 0.000000000000002 90
ENSDART00000125032 pknox1.2-001 protein_coding Danio_rerio 0.00000000000003 86
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00009 55

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