C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide B, 128kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417433 POLR1B-005 ENSG00000125630 9606 + 2:112542465-112576295 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000417433
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000417433 0.398±0.00 0.880±0.00 0.639±0.00 1.041±0.53 1.436±0.41 0.735±0.00 3.749±0.00 1.178±0.71 0.914±0.00 2.724±0.00 1.963±0.25 0.972±0.35 1.876±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047U CIL_00047U_0001 CGP 2:112482154-112577150
CIL_00018Y CIL_00018Y_0001 CGP 2:112541915-112589275

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0010467 TAS gene expression
GO:0032549 IEA ribonucleoside binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103205 Polr1b-001 protein_coding Mus_musculus 0 3133
ENSMUST00000028874 Polr1b-002 protein_coding Mus_musculus 0 1790
ENSDART00000114741 polr1b-001 protein_coding Danio_rerio 0 863
ENSMUST00000147727 Polr1b-003 processed_transcript Mus_musculus 0 313
ENSMUST00000133345 Polr1b-005 processed_transcript Mus_musculus 0 305

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