C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide B, 128kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448770 POLR1B-004 ENSG00000125630 9606 + 2:112542274-112576029 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000448770
Transcript ID Adipose Adrenal Bladder Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000448770 0.600±0.00 1.600±0.00 0.763±0.00 3.424±0.00 0.554±0.00 1.786±0.19 1.199±0.20 1.000±0.07 1.164±0.00 4.185±1.66 1.417±0.72 9.035±2.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047U CIL_00047U_0001 CGP 2:112482154-112577150
CIL_00018Y CIL_00018Y_0001 CGP 2:112541915-112589275

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0006351 IEA transcription, DNA-templated
GO:0032549 IEA ribonucleoside binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103205 Polr1b-001 protein_coding Mus_musculus 0 1831
ENSDART00000114741 polr1b-001 protein_coding Danio_rerio 0 566
ENSMUST00000028874 Polr1b-002 protein_coding Mus_musculus 0 488
ENSMUST00000147727 Polr1b-003 processed_transcript Mus_musculus 0 313
ENSMUST00000133345 Polr1b-005 processed_transcript Mus_musculus 0 305

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