C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000087386-ENSDARG00000028118 CGP 7955 15:6007401-6302800
GeneTranscriptPositionBiotype
ENSDARG00000028118 (dscamb)
Down syndrome cell adhesion molecule b 		ENSDART00000098038 (dscamb-201) 6033952-6302800 protein_coding
ENSDART00000148350 (dscamb-001) 6032677-6142029 protein_coding
ENSDARG00000087386 (pcp4b)
Purkinje cell protein 4b 		ENSDART00000123797 (pcp4b-201) 6007401-6012821 protein_coding
CIL_0001CT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183036-ENSG00000171587 CGP 9606 21:39867317-40847139
GeneTranscriptPositionBiotype
ENSG00000171587 (DSCAM)
Down syndrome cell adhesion molecule 		ENST00000400454 (DSCAM-001) 40010999-40847139 protein_coding
ENST00000404019 (DSCAM-002) 40012901-40353654 protein_coding
ENST00000617870 (DSCAM-201) 40012414-40369270 protein_coding
ENSG00000183036 (PCP4)
Purkinje cell protein 4 		ENST00000328619 (PCP4-001) 39867317-39929397 protein_coding
ENST00000462224 (PCP4-002) 39867439-39929397 nonsense_mediated_decay
ENST00000467565 (PCP4-003) 39898476-39929397 processed_transcript
ENST00000468717 (PCP4-004) 39867451-39929397 processed_transcript
ENSG00000233756 (DSCAM-IT1)
DSCAM intronic transcript 1 (non-protein coding) 		ENST00000440363 (DSCAM-IT1-001) 40618507-40630767 sense_intronic
ENST00000441910 (DSCAM-IT1-002) 40615378-40630767 sense_intronic
ENSG00000235123 (DSCAM-AS1)
DSCAM antisense RNA 1 		ENST00000422749 (DSCAM-AS1-002) 40383083-40385358 antisense
ENST00000427451 (DSCAM-AS1-001) 40383083-40385358 antisense
ENST00000444046 (DSCAM-AS1-003) 40383083-40385358 antisense
ENST00000455354 (DSCAM-AS1-004) 40383083-40385358 antisense
CIL_0001CT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000090223-ENSMUSG00000050272 CGP 10090 16:96467606-97170752
GeneTranscriptPositionBiotype
ENSMUSG00000000159 (Igsf5)
immunoglobulin superfamily, member 5 		ENSMUST00000000163 (Igsf5-002) 96361794-96404028 protein_coding
ENSMUST00000081093 (Igsf5-003) 96361794-96404031 protein_coding
ENSMUST00000113794 (Igsf5-001) 96361668-96422121 protein_coding
ENSMUST00000113795 (Igsf5-007) 96361794-96525580 protein_coding
ENSMUST00000136292 (Igsf5-005) 96396406-96421954 protein_coding
ENSMUST00000139595 (Igsf5-006) 96386331-96403328 processed_transcript
ENSMUSG00000050272 (Dscam)
Down syndrome cell adhesion molecule 		ENSMUST00000056102 (Dscam-001) 96592079-97170752 protein_coding
ENSMUSG00000090223 (Pcp4)
Purkinje cell protein 4 		ENSMUST00000061739 (Pcp4-001) 96467606-96525793 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CT_0001ENSDARG00000028118ENSDART00000098038ENSDART00000148350ENSDARG00000087386ENSDART00000123797CIL_0001CT_0002ENSG00000171587ENST00000400454ENST00000404019ENST00000617870ENSG00000183036ENST00000328619ENST00000462224ENST00000467565ENST00000468717ENSG00000233756ENST00000440363ENST00000441910ENSG00000235123ENST00000422749ENST00000427451ENST00000444046ENST00000455354CIL_0001CT_0003ENSMUSG00000000159ENSMUST00000000163ENSMUST00000081093ENSMUST00000113794ENSMUST00000113795ENSMUST00000136292ENSMUST00000139595ENSMUSG00000050272ENSMUST00000056102ENSMUSG00000090223ENSMUST00000061739
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CT_0001ENSDARG00000028118ENSDART00000098038ENSDART00000148350ENSDARG00000087386ENSDART00000123797CIL_0001CT_0002ENSG00000171587ENST00000400454ENST00000404019ENST00000617870ENSG00000183036ENST00000328619ENST00000467565ENST00000468717ENSG00000233756ENST00000440363ENST00000441910ENSG00000235123ENST00000422749ENST00000427451ENST00000444046ENST00000455354CIL_0001CT_0003ENSMUSG00000000159ENSMUST00000000163ENSMUST00000081093ENSMUST00000113794ENSMUST00000113795ENSMUST00000139595ENSMUSG00000050272ENSMUST00000056102ENSMUSG00000090223ENSMUST00000061739
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000028118 ENSDART00000098038 N/A N/A N/A 3.042±0.61 N/A N/A 0.205±0.00 0.207±0.13 N/A N/A N/A N/A N/A N/A
ENSDART00000148350 N/A N/A N/A N/A N/A N/A 0.013±0.01 0.036±0.00 0.044±0.00 N/A N/A N/A N/A N/A
ENSDARG00000087386 ENSDART00000123797 N/A N/A N/A N/A N/A N/A 0.567±0.00 N/A N/A N/A 1.968±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171587 ENST00000400454 N/A N/A N/A 0.814±0.00 N/A 0.049±0.00 N/A N/A 0.012±0.01 N/A N/A N/A 0.123±0.05 0.056±0.00
ENST00000404019 N/A N/A N/A 0.937±0.00 N/A N/A N/A 0.208±0.00 N/A 0.034±0.01 N/A 0.016±0.01 0.093±0.00 0.078±0.04
ENST00000617870 0.003±0.00 0.003±0.00 N/A 1.070±0.00 N/A 0.021±0.00 N/A N/A 0.004±0.00 N/A N/A 0.025±0.00 0.093±0.03 0.109±0.00
ENSG00000183036 ENST00000328619 0.368±0.00 0.346±0.00 N/A 36.311±27.07 0.267±0.14 17.449±17.41 0.960±0.00 20.729±0.00 17.749±0.00 0.049±0.00 0.183±0.00 1.830±1.62 0.637±0.51 12.185±11.77
ENST00000462224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467565 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 0.101±0.00 N/A N/A N/A
ENST00000468717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.461±0.00 N/A
ENSG00000233756 ENST00000440363 N/A N/A N/A 0.206±0.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00
ENST00000441910 N/A N/A N/A 0.195±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235123 ENST00000422749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A
ENST00000427451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A
ENST00000444046 0.040±0.00 0.161±0.00 N/A 0.029±0.00 0.035±0.00 0.025±0.00 0.053±0.00 0.018±0.00 N/A 0.007±0.00 0.017±0.00 N/A 0.041±0.00 0.026±0.00
ENST00000455354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000159 ENSMUST00000000163 2.254±0.00 N/A 15.187±2.84 N/A 0.305±0.07 4.955±0.00 N/A 6.921±1.17 N/A 8.884±0.94 N/A 1.693±0.60 0.400±0.00 0.604±0.23
ENSMUST00000081093 N/A N/A N/A N/A 0.257±0.12 17.266±1.79 0.111±0.00 11.850±1.93 6.591±4.64 2.246±0.00 N/A 0.841±0.35 1.929±2.15 0.133±0.09
ENSMUST00000113794 N/A 0.057±0.00 N/A N/A 0.226±0.07 2.428±0.00 0.054±0.00 4.210±0.71 0.753±0.12 2.432±0.41 0.035±0.00 0.429±0.00 0.264±0.24 0.134±0.00
ENSMUST00000113795 N/A N/A N/A N/A 0.255±0.08 6.055±2.34 0.136±0.00 N/A 3.557±2.00 N/A N/A 1.056±0.27 0.032±0.00 N/A
ENSMUST00000136292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.340±0.00
ENSMUSG00000050272 ENSMUST00000056102 0.038±0.04 0.009±0.00 0.004±0.00 7.560±4.03 0.224±0.12 0.052±0.03 0.006±0.00 0.020±0.01 0.004±0.00 0.007±0.00 0.014±0.01 0.109±0.05 0.040±0.02 0.272±0.11
ENSMUSG00000090223 ENSMUST00000061739 29.320±28.61 0.411±0.07 295.609±84.43 121.522±115.79 0.405±0.08 N/A 0.715±0.46 N/A N/A N/A 0.221±0.11 6.725±9.62 6.439±9.23 1.463±0.97

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