C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G protein-coupled receptor kinase interacting ArfGAP 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355312 GIT2-001 ENSG00000139436 9606 - 12:109929792-109996224 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355312 5.669±0.00 8.025±0.00 2.016±0.00 1.812±0.00 2.493±1.26 2.260±0.00 2.963±1.97 4.211±0.00 1.414±0.10 3.101±1.17 7.318±0.00 5.315±2.16 8.059±0.59 2.290±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JH CIL_0001JH_0002 CGP 12:109850943-109983841
CIL_0001GG CIL_0001GG_0002 CGP 12:109900264-109996389
CIL_0001GH CIL_0001GH_0002 CGP 12:109929792-110039763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005654 IDA nucleoplasm
GO:0005925 IDA focal adhesion
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0008277 TAS regulation of G-protein coupled receptor protein signaling pathway
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0048266 IEA behavioral response to pain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086564 Git2-005 protein_coding Mus_musculus 0 2704
ENSMUST00000155908 Git2-006 protein_coding Mus_musculus 0 1591
ENSMUST00000043283 Git2-002 protein_coding Mus_musculus 0 1535
ENSMUST00000178440 Git2-201 protein_coding Mus_musculus 0 1520
ENSMUST00000112185 Git2-001 protein_coding Mus_musculus 0 1515
ENSMUST00000112183 Git2-004 protein_coding Mus_musculus 0 1507
ENSMUST00000153756 Git2-014 retained_intron Mus_musculus 0 1382
ENSMUST00000131993 Git2-010 protein_coding Mus_musculus 0 942
ENSMUST00000131016 Git2-009 protein_coding Mus_musculus 0 717
ENSMUST00000146044 Git2-007 protein_coding Mus_musculus 0 538
ENSMUST00000133096 Git2-003 retained_intron Mus_musculus 0 505
ENSMUST00000130925 Git2-012 protein_coding Mus_musculus 0 455
ENSMUST00000144191 Git2-011 processed_transcript Mus_musculus 0 327
ENSMUST00000131582 Git2-008 processed_transcript Mus_musculus 0 298
ENSMUST00000100812 Git1-004 protein_coding Mus_musculus 1e-29 137
ENSMUST00000037285 Git1-001 protein_coding Mus_musculus 1e-29 137

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