C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001LJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180745-ENSG00000132334 CGP 9606 10:127877841-128085855
GeneTranscriptPositionBiotype
ENSG00000132334 (PTPRE)
protein tyrosine phosphatase, receptor type, E 		ENST00000254667 (PTPRE-003) 127907061-128085855 protein_coding
ENST00000306042 (PTPRE-004) 128047570-128085855 protein_coding
ENST00000442830 (PTPRE-007) 127907152-128049666 protein_coding
ENST00000455661 (PTPRE-006) 127998126-128056163 protein_coding
ENST00000463727 (PTPRE-001) 128068382-128072682 retained_intron
ENST00000467366 (PTPRE-010) 128047406-128056171 protein_coding
ENST00000471218 (PTPRE-008) 127987344-128056170 protein_coding
ENST00000479896 (PTPRE-005) 128047631-128085855 nonsense_mediated_decay
ENST00000487428 (PTPRE-002) 128047619-128049635 retained_intron
ENST00000492479 (PTPRE-011) 128062919-128070841 retained_intron
ENST00000495530 (PTPRE-009) 128047629-128070375 nonsense_mediated_decay
ENSG00000180745 (CLRN3)
clarin 3 		ENST00000368671 (CLRN3-001) 127877841-127892947 protein_coding
ENSG00000227076 (RP11-4C20.4)
 ENST00000433110 (RP11-4C20.4-001) 127934698-127936167 sense_intronic
ENSG00000232259 (RP11-4C20.3)
 ENST00000420845 (RP11-4C20.3-001) 127929376-127934517 lincRNA
CIL_0001LJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050866-ENSMUSG00000041836 CGP 10090 7:135511466-135686294
GeneTranscriptPositionBiotype
ENSMUSG00000041836 (Ptpre)
protein tyrosine phosphatase, receptor type, E 		ENSMUST00000073961 (Ptpre-201) 135537824-135686294 protein_coding
ENSMUSG00000050866 (Clrn3)
clarin 3 		ENSMUST00000053716 (Clrn3-201) 135511466-135528654 protein_coding
ENSMUSG00000088141 (Mir1962)
microRNA 1962 		ENSMUST00000157516 (Mir1962-201) 135566162-135566282 miRNA
ENSMUSG00000097471 (5830432E09Rik)
RIKEN cDNA 5830432E09 gene 		ENSMUST00000180693 (5830432E09Rik-201) 135635931-135652283 lincRNA
ENSMUST00000181940 (5830432E09Rik-202) 135648457-135652314 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LJ_0001ENSG00000132334ENST00000254667ENST00000306042ENST00000442830ENST00000455661ENST00000463727ENST00000467366ENST00000471218ENST00000479896ENST00000487428ENST00000492479ENST00000495530ENSG00000180745ENST00000368671ENSG00000227076ENST00000433110ENSG00000232259ENST00000420845CIL_0001LJ_0002ENSMUSG00000041836ENSMUST00000073961ENSMUSG00000050866ENSMUST00000053716ENSMUSG00000088141ENSMUST00000157516ENSMUSG00000097471ENSMUST00000180693ENSMUST00000181940
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LJ_0001ENSG00000132334ENST00000254667ENST00000306042ENST00000479896ENSG00000180745ENST00000368671ENSG00000227076ENST00000433110ENSG00000232259ENST00000420845CIL_0001LJ_0002ENSMUSG00000041836ENSMUST00000073961ENSMUSG00000050866ENSMUST00000053716ENSMUSG00000088141ENSMUST00000157516ENSMUSG00000097471ENSMUST00000180693
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132334 ENST00000254667 1.988±0.00 4.053±0.00 N/A 3.984±0.12 0.902±0.00 0.756±0.06 1.806±1.28 0.838±0.00 0.182±0.00 1.936±0.95 N/A 1.539±1.21 0.584±0.00 0.756±0.00
ENST00000306042 N/A 1.670±0.00 1.166±0.00 N/A 0.711±0.05 1.362±1.10 0.844±0.13 0.798±0.13 1.086±0.78 5.538±0.00 0.112±0.00 1.535±0.76 1.610±0.27 0.627±0.09
ENST00000442830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479896 1.321±0.00 1.208±0.00 N/A 1.263±0.00 0.551±0.00 N/A N/A N/A N/A 1.809±0.00 N/A 0.396±0.16 N/A 0.185±0.00
ENST00000487428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180745 ENST00000368671 0.305±0.00 0.022±0.00 0.497±0.00 0.225±0.00 0.894±0.81 3.396±0.09 0.070±0.00 7.704±2.52 10.080±0.00 0.047±0.00 N/A 8.764±6.14 0.090±0.02 0.048±0.02
ENSG00000227076 ENST00000433110 N/A 0.060±0.00 N/A N/A 0.127±0.00 0.115±0.00 0.181±0.07 N/A N/A 0.792±0.00 N/A N/A 0.161±0.00 0.722±0.33
ENSG00000232259 ENST00000420845 N/A 0.086±0.00 0.194±0.00 0.141±0.00 0.108±0.06 0.534±0.42 0.110±0.06 N/A N/A 0.184±0.00 N/A 0.341±0.00 N/A 0.638±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041836 ENSMUST00000073961 1.797±0.31 0.945±0.25 2.765±0.02 2.992±2.02 4.296±0.86 3.222±0.82 0.912±0.21 0.674±0.16 1.227±0.91 12.730±0.36 0.195±0.11 4.792±2.52 1.943±0.56 2.674±0.80
ENSMUSG00000050866 ENSMUST00000053716 0.027±0.00 N/A 0.002±0.00 0.002±0.00 0.011±0.00 22.176±3.87 N/A 13.475±3.16 0.021±0.01 0.129±0.09 N/A 0.073±0.04 0.795±0.81 0.015±0.01
ENSMUSG00000088141 ENSMUST00000157516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.006±0.00 N/A N/A
ENSMUSG00000097471 ENSMUST00000180693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A
ENSMUST00000181940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading