C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000151766 thrb-003 ENSDARG00000021163 7955 - 19:19505437-19646460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000151766
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000151766 6.908±0.00 3.958±2.89 7.364±0.00 0.446±0.00 0.992±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025B CIL_00025B_0001 CGP 19:19388563-19646473

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001076 IDA RNA polymerase II transcription factor binding transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004887 IEA thyroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0030522 ISS intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0070324 ISS thyroid hormone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000188403 NR1H4-005 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000280696 THRB-003 protein_coding Homo_sapiens 0 427
ENST00000321046 NR1H4-004 nonsense_mediated_decay Homo_sapiens 0.00000000000004 84
ENST00000356447 THRB-001 protein_coding Homo_sapiens 0 427
ENST00000392986 NR1H4-003 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000396671 THRB-201 protein_coding Homo_sapiens 0 427
ENST00000416420 THRB-004 protein_coding Homo_sapiens 0 427
ENST00000548884 NR1H4-001 protein_coding Homo_sapiens 0.00000000000007 84
ENST00000549996 NR1H4-002 protein_coding Homo_sapiens 0.00000000008 73
ENST00000551379 NR1H4-006 protein_coding Homo_sapiens 0.00000000000003 84

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