C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000280696 THRB-003 ENSG00000151090 9606 - 3:24122838-24165595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000280696
Transcript ID Testis
ENST00000280696 0.275±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025B CIL_00025B_0002 CGP 3:23945260-24495282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003714 TAS transcription corepressor activity
GO:0004887 IDA thyroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 TAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0019899 IPI enzyme binding
GO:0030522 IEA intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070324 IDA thyroid hormone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022304 Thrb-001 protein_coding Mus_musculus 0 2063
ENSMUST00000091471 Thrb-201 protein_coding Mus_musculus 0 1576
ENSMUST00000022303 Thrb-002 protein_coding Mus_musculus 0 1576
ENSDART00000153187 thrab-001 protein_coding Danio_rerio 0 507
ENSDART00000000160 thraa-001 protein_coding Danio_rerio 0 484
ENSDART00000151127 thraa-002 protein_coding Danio_rerio 0 484
ENSDART00000074549 thrab-201 protein_coding Danio_rerio 0 468
ENSDART00000151766 thrb-003 protein_coding Danio_rerio 0 427
ENSDART00000142170 thrb-002 processed_transcript Danio_rerio 0 425
ENSDART00000017869 thrb-001 nonsense_mediated_decay Danio_rerio 0 425
ENSDART00000151575 thraa-003 retained_intron Danio_rerio 0 316

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