C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002A2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100997-ENSG00000101003 CGP 9606 20:25294743-25452628
GeneTranscriptPositionBiotype
ENSG00000100994 (PYGB)
phosphorylase, glycogen; brain 		ENST00000216962 (PYGB-001) 25248069-25298014 protein_coding
ENST00000428458 (PYGB-002) 25289848-25296468 protein_coding
ENST00000471359 (PYGB-003) 25293901-25296636 processed_transcript
ENSG00000100997 (ABHD12)
abhydrolase domain containing 12 		ENST00000339157 (ABHD12-001) 25300198-25390976 protein_coding
ENST00000376542 (ABHD12-002) 25294743-25390983 protein_coding
ENST00000450393 (ABHD12-005) 25309499-25339731 protein_coding
ENST00000461204 (ABHD12-004) 25320199-25390753 nonsense_mediated_decay
ENST00000465694 (ABHD12-003) 25294743-25300884 nonsense_mediated_decay
ENST00000471287 (ABHD12-008) 25308457-25390134 protein_coding
ENST00000481556 (ABHD12-007) 25306833-25310472 processed_transcript
ENST00000491682 (ABHD12-006) 25306833-25339749 protein_coding
ENST00000576316 (ABHD12-010) 25303263-25309498 protein_coding
ENSG00000101003 (GINS1)
GINS complex subunit 1 (Psf1 homolog) 		ENST00000262460 (GINS1-001) 25407727-25448555 protein_coding
ENST00000473460 (GINS1-004) 25413457-25417246 processed_transcript
ENST00000481735 (GINS1-002) 25443024-25452628 processed_transcript
ENST00000484893 (GINS1-003) 25407731-25418195 processed_transcript
ENSG00000227379 (PPIAP2)
peptidylprolyl isomerase A (cyclophilin A) pseudogene 2 		ENST00000414143 (PPIAP2-001) 25368275-25368766 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0002A2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032046-ENSMUSG00000027454 CGP 10090 2:150832493-150931280
GeneTranscriptPositionBiotype
ENSMUSG00000027454 (Gins1)
GINS complex subunit 1 (Psf1 homolog) 		ENSMUST00000028948 (Gins1-001) 150909594-150931280 protein_coding
ENSMUST00000123217 (Gins1-004) 150912819-150927545 processed_transcript
ENSMUST00000140950 (Gins1-002) 150909617-150926097 processed_transcript
ENSMUST00000152991 (Gins1-003) 150905400-150925903 processed_transcript
ENSMUSG00000032046 (Abhd12)
abhydrolase domain containing 12 		ENSMUST00000056149 (Abhd12-001) 150832493-150904741 protein_coding
ENSMUST00000129228 (Abhd12-006) 150846330-150904647 nonsense_mediated_decay
ENSMUST00000138608 (Abhd12-003) 150837359-150904662 processed_transcript
ENSMUST00000141899 (Abhd12-002) 150832517-150904731 nonsense_mediated_decay
ENSMUST00000145826 (Abhd12-005) 150833116-150839722 nonsense_mediated_decay
ENSMUST00000155119 (Abhd12-007) 150843033-150851490 retained_intron
ENSMUST00000156641 (Abhd12-004) 150832493-150842570 processed_transcript
ENSMUSG00000087887 (Gm23598)
predicted gene, 23598 		ENSMUST00000157262 (Gm23598-201) 150883723-150883866 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002A2_0001ENSG00000100994ENST00000216962ENST00000428458ENST00000471359ENSG00000100997ENST00000339157ENST00000376542ENST00000450393ENST00000461204ENST00000465694ENST00000471287ENST00000481556ENST00000491682ENST00000576316ENSG00000101003ENST00000262460ENST00000473460ENST00000481735ENST00000484893ENSG00000227379ENST00000414143CIL_0002A2_0002ENSMUSG00000027454ENSMUST00000028948ENSMUST00000123217ENSMUST00000140950ENSMUST00000152991ENSMUSG00000032046ENSMUST00000056149ENSMUST00000129228ENSMUST00000138608ENSMUST00000141899ENSMUST00000145826ENSMUST00000155119ENSMUST00000156641ENSMUSG00000087887ENSMUST00000157262
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002A2_0001ENSG00000100994ENST00000216962ENSG00000100997ENST00000339157ENST00000376542ENST00000461204ENST00000491682ENST00000576316ENSG00000101003ENST00000262460ENST00000473460ENST00000481735ENSG00000227379ENST00000414143CIL_0002A2_0002ENSMUSG00000027454ENSMUST00000028948ENSMUST00000123217ENSMUST00000140950ENSMUST00000152991ENSMUSG00000032046ENSMUST00000056149ENSMUST00000129228ENSMUST00000138608ENSMUST00000141899ENSMUST00000156641ENSMUSG00000087887ENSMUST00000157262
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100994 ENST00000216962 40.835±0.00 42.508±0.00 2.152±0.00 40.434±33.68 27.898±21.83 23.964±12.40 40.366±29.19 13.666±12.28 14.813±11.11 8.787±5.22 2.779±2.31 39.387±24.04 15.882±2.57 35.529±19.90
ENST00000428458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100997 ENST00000339157 5.099±0.00 5.442±0.00 N/A 24.192±14.62 6.454±0.58 3.984±2.85 5.551±4.67 16.085±14.45 6.862±3.97 11.868±6.82 3.638±2.67 14.794±6.41 9.559±1.13 6.578±0.82
ENST00000376542 N/A N/A 1.727±0.00 N/A 2.027±0.00 N/A 0.286±0.00 N/A 0.928±0.00 N/A N/A 4.126±0.00 4.947±1.65 N/A
ENST00000450393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.042±0.00 N/A N/A N/A
ENST00000465694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491682 N/A N/A 2.446±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576316 N/A N/A N/A N/A N/A 3.369±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101003 ENST00000262460 0.186±0.00 0.273±0.00 N/A 0.481±0.19 1.253±0.57 0.643±0.58 0.220±0.00 0.415±0.03 0.294±0.16 0.257±0.10 0.099±0.00 4.034±2.54 1.237±0.40 3.380±0.30
ENST00000473460 N/A N/A N/A 1.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481735 N/A N/A N/A N/A N/A N/A N/A 3.058±0.00 N/A N/A N/A N/A N/A N/A
ENST00000484893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227379 ENST00000414143 0.033±0.00 0.138±0.00 N/A 0.224±0.00 0.070±0.00 0.486±0.39 0.032±0.00 0.349±0.00 0.108±0.05 0.126±0.04 0.060±0.00 0.586±0.73 0.125±0.01 0.215±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027454 ENSMUST00000028948 0.980±0.30 0.812±0.27 1.497±0.61 5.980±4.50 0.794±0.40 0.888±0.40 0.824±0.15 0.411±0.16 12.140±12.78 0.365±0.12 0.876±0.21 2.157±0.96 7.583±4.98 6.533±2.22
ENSMUST00000123217 N/A N/A N/A N/A 0.219±0.00 N/A N/A 0.196±0.00 N/A N/A N/A 0.357±0.00 N/A N/A
ENSMUST00000140950 0.194±0.00 N/A N/A N/A 0.371±0.00 N/A N/A 0.134±0.00 N/A N/A N/A 0.903±0.00 N/A N/A
ENSMUST00000152991 N/A 0.460±0.00 N/A 1.413±0.00 N/A 0.822±0.00 0.995±0.00 N/A N/A N/A N/A N/A N/A 3.714±0.00
ENSMUSG00000032046 ENSMUST00000056149 40.763±4.50 17.226±3.70 97.954±21.19 24.366±5.65 34.488±8.37 19.663±3.38 16.193±0.46 26.175±3.19 11.481±2.45 35.097±4.55 9.807±1.25 31.983±11.80 22.306±16.54 20.607±9.97
ENSMUST00000129228 N/A 32.779±16.06 N/A N/A N/A N/A N/A N/A N/A 20.114±0.00 N/A 22.575±1.89 N/A N/A
ENSMUST00000138608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.859±6.57 N/A N/A
ENSMUST00000141899 N/A 17.765±4.87 N/A N/A N/A 6.927±3.32 N/A N/A 4.740±0.00 N/A N/A 18.279±6.22 5.103±0.00 N/A
ENSMUST00000145826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156641 N/A N/A N/A 22.959±0.00 N/A N/A N/A N/A N/A N/A 2.247±0.63 13.106±2.90 11.733±1.68 N/A
ENSMUSG00000087887 ENSMUST00000157262 N/A N/A 6.474±0.00 4.334±0.00 704.662±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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