C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002A5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039220-ENSDARG00000058473 CGP 7955 2:8945288-9273952
GeneTranscriptPositionBiotype
ENSDARG00000058473 (st6galnac3)
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 		ENSDART00000146715 (st6galnac3-001) 9114487-9273952 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002A5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039037-ENSMUSG00000052544 CGP 10090 3:152817081-153725062
GeneTranscriptPositionBiotype
ENSMUSG00000039037 (St6galnac5)
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 		ENSMUST00000044278 (St6galnac5-001) 152817081-152982246 protein_coding
ENSMUST00000161757 (St6galnac5-002) 152975374-152982052 processed_transcript
ENSMUSG00000039047 (Pigk)
phosphatidylinositol glycan anchor biosynthesis, class K 		ENSMUST00000045029 (Pigk-002) 152714113-152785922 protein_coding
ENSMUST00000051510 (Pigk-004) 152738262-152785848 processed_transcript
ENSMUST00000159045 (Pigk-008) 152738043-152740196 processed_transcript
ENSMUST00000159899 (Pigk-001) 152714100-152788898 protein_coding
ENSMUST00000160651 (Pigk-007) 152763381-152766524 processed_transcript
ENSMUST00000161596 (Pigk-005) 152714120-152980408 nonsense_mediated_decay
ENSMUST00000162642 (Pigk-006) 152714113-152842921 nonsense_mediated_decay
ENSMUST00000162835 (Pigk-003) 152714106-152741164 retained_intron
ENSMUSG00000052544 (St6galnac3)
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 		ENSMUST00000064460 (St6galnac3-201) 153205405-153725062 protein_coding
ENSMUSG00000089237 (Gm22206)
predicted gene, 22206 		ENSMUST00000158612 (Gm22206-201) 153708911-153709026 snoRNA
ENSMUSG00000089376 (Gm22136)
predicted gene, 22136 		ENSMUST00000158751 (Gm22136-201) 153621702-153621969 misc_RNA
ENSMUSG00000090017 (Gm16213)
predicted gene 16213 		ENSMUST00000160076 (Gm16213-001) 152920240-152921399 antisense
ENSMUSG00000090040 (Gm16232)
predicted gene 16232 		ENSMUST00000162856 (Gm16232-001) 152876051-152876217 processed_pseudogene
ENSMUSG00000090163 (Gm16231)
predicted gene 16231 		ENSMUST00000160432 (Gm16231-001) 152943313-152943944 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002A5_0001ENSDARG00000058473ENSDART00000146715CIL_0002A5_0002ENSMUSG00000039037ENSMUST00000044278ENSMUST00000161757ENSMUSG00000039047ENSMUST00000045029ENSMUST00000051510ENSMUST00000159045ENSMUST00000159899ENSMUST00000160651ENSMUST00000161596ENSMUST00000162642ENSMUST00000162835ENSMUSG00000052544ENSMUST00000064460ENSMUSG00000089237ENSMUST00000158612ENSMUSG00000089376ENSMUST00000158751ENSMUSG00000090017ENSMUST00000160076ENSMUSG00000090040ENSMUST00000162856ENSMUSG00000090163ENSMUST00000160432
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002A5_0001ENSDARG00000058473ENSDART00000146715CIL_0002A5_0002ENSMUSG00000039037ENSMUST00000044278ENSMUST00000161757ENSMUSG00000039047ENSMUST00000045029ENSMUST00000051510ENSMUST00000159899ENSMUST00000161596ENSMUST00000162835ENSMUSG00000052544ENSMUST00000064460ENSMUSG00000089237ENSMUST00000158612ENSMUSG00000089376ENSMUST00000158751ENSMUSG00000090017ENSMUST00000160076ENSMUSG00000090040ENSMUST00000162856ENSMUSG00000090163ENSMUST00000160432
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058473 ENSDART00000146715 N/A N/A N/A 7.041±1.46 N/A N/A 1.555±1.18 0.408±0.06 N/A N/A 1.007±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039037 ENSMUST00000044278 1.195±0.14 1.398±0.10 N/A 8.365±0.59 2.801±1.25 0.737±0.12 N/A 0.903±0.02 N/A 0.782±0.12 N/A 1.047±0.31 N/A N/A
ENSMUST00000161757 N/A N/A N/A N/A 9.999±0.30 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039047 ENSMUST00000045029 8.835±2.40 6.215±1.51 3.261±0.00 N/A 4.372±0.70 3.267±0.61 2.240±0.20 5.640±0.71 5.526±1.56 3.624±1.12 N/A 5.111±1.23 4.214±1.00 9.307±3.71
ENSMUST00000051510 N/A N/A 3.456±0.56 29.392±0.00 N/A N/A N/A N/A 3.127±1.02 N/A N/A 16.821±7.59 13.942±8.90 14.857±0.00
ENSMUST00000159045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159899 4.166±1.04 4.643±2.00 1.310±0.14 4.989±2.05 1.468±0.38 2.570±0.81 1.141±0.21 2.647±0.11 1.530±0.34 2.965±0.85 3.181±1.07 3.520±2.39 2.048±0.60 1.205±0.27
ENSMUST00000160651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.012±0.16
ENSMUST00000162642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162835 N/A 7.004±0.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052544 ENSMUST00000064460 N/A 1.680±0.75 N/A 3.034±0.60 2.675±1.47 1.094±0.45 0.882±0.00 N/A 0.970±0.85 N/A 0.479±0.24 3.567±1.36 2.609±0.56 0.358±0.29
ENSMUSG00000089237 ENSMUST00000158612 N/A N/A N/A N/A N/A N/A N/A 1185.540±0.00 N/A N/A N/A 3289.375±807.06 N/A N/A
ENSMUSG00000089376 ENSMUST00000158751 0.765±0.00 N/A 0.250±0.16 N/A N/A N/A N/A 0.397±0.00 N/A 0.821±0.00 N/A 0.439±0.00 N/A N/A
ENSMUSG00000090017 ENSMUST00000160076 0.095±0.00 0.230±0.00 0.044±0.00 N/A N/A N/A 0.064±0.00 0.081±0.00 0.048±0.01 N/A N/A N/A 0.068±0.00 0.071±0.01
ENSMUSG00000090040 ENSMUST00000162856 N/A N/A N/A 2.395±0.10 134.286±14.87 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090163 ENSMUST00000160432 N/A N/A N/A N/A N/A N/A N/A 0.222±0.00 N/A N/A N/A N/A N/A 2.164±1.37

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