C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044278 St6galnac5-001 ENSMUSG00000039037 10090 - 3:152817081-152982246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungOvaryENSMUST00000044278
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Ovary
ENSMUST00000044278 1.195±0.14 1.398±0.10 8.365±0.59 2.801±1.25 0.737±0.12 0.903±0.02 0.782±0.12 1.047±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048N CIL_00048N_0002 CGP 3:152462815-152980408
CIL_00048M CIL_00048M_0002 CGP 3:152714100-152982246
CIL_0002A5 CIL_0002A5_0002 CGP 3:152817081-153725062

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001665 IDA alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
GO:0006486 IEA protein glycosylation
GO:0006688 IDA glycosphingolipid biosynthetic process
GO:0008373 IEA:IDA sialyltransferase activity
GO:0009312 IDA oligosaccharide biosynthetic process
GO:0030173 IEA integral component of Golgi membrane
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318803 ST6GALNAC5-002 nonsense_mediated_decay Homo_sapiens 0 1400
ENST00000477717 ST6GALNAC5-003 protein_coding Homo_sapiens 0 1458
ENST00000480428 ST6GALNAC5-005 processed_transcript Homo_sapiens 0 436
ENST00000488940 ST6GALNAC5-001 processed_transcript Homo_sapiens 0 654
ENST00000496845 ST6GALNAC5-004 processed_transcript Homo_sapiens 0 431

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