C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIO kinase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025270 Riok3-201 ENSMUSG00000024404 10090 + 18:12128850-12157367 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025270
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025270 14.404±1.59 34.692±12.20 19.283±3.45 13.723±3.03 12.199±3.49 11.687±3.56 10.171±1.05 12.733±0.39 15.759±6.83 16.356±1.20 23.932±5.11 12.100±2.75 20.810±4.54 16.649±4.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FI CIL_0002FI_0003 CGP 18:11981303-12157367
CIL_0005WY CIL_0005WY_0002 CGP 18:12128850-12189997

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006468 IEA protein phosphorylation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339486 RIOK3-001 protein_coding Homo_sapiens 0 2067
ENST00000418778 RIOK3P1-001 processed_pseudogene Homo_sapiens 0 1184
ENST00000577501 RIOK3-002 protein_coding Homo_sapiens 0 2019
ENST00000581220 RIOK3-005 retained_intron Homo_sapiens 3.00004e-41 174
ENST00000581302 RIOK3-003 retained_intron Homo_sapiens 0 1746
ENST00000581339 RIOK3-004 retained_intron Homo_sapiens 0 346
ENST00000581585 RIOK3-008 protein_coding Homo_sapiens 0 1796
ENST00000584052 RIOK3-009 retained_intron Homo_sapiens 0 420
ENST00000584130 RIOK3-007 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000584992 RIOK3-010 retained_intron Homo_sapiens 0 505

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