C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000513394 NPM1P21-001 ENSG00000248578 9606 - 8:56101199-56102267 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyOvaryTestisENST00000513394
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Ovary Testis
ENST00000513394 0.084±0.00 0.088±0.00 0.014±0.00 0.014±0.00 0.053±0.00 0.033±0.01 0.014±0.00 0.060±0.05 0.201±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RN CIL_0002RN_0001 CGP 8:56067295-56113982

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 854
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 854
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 854
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 643
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 634
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 246
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 616

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