| Source ID |
Type |
Tax ID |
Position |
| ENSMUSG00000040010-ENSMUSG00000025317 |
CGP |
10090 |
8:121881150-121944904  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0002SX_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0002SX_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000103257' => 'solute carrier family 7 (amino acid transporter light chain, L system), member 5',
'ENSG00000174990' => 'carbonic anhydrase VA, mitochondrial',
'ENSG00000260466' => null,
'ENSG00000260603' => null,
'ENSG00000270385' => null,
'ENSG00000278598' => 'microRNA 6775',
'ENSMUSG00000025317' => 'carbonic anhydrase 5a, mitochondrial',
'ENSMUSG00000040010' => 'solute carrier family 7 (cationic amino acid transporter, y+ system), member 5',
'ENSMUSG00000074052' => 'cDNA sequence BC048644',
'ENSMUSG00000097969' => 'predicted gene, 26999'
),
'gene_name_arr' => array(
'ENSG00000103257' => 'SLC7A5',
'ENSG00000174990' => 'CA5A',
'ENSG00000260466' => 'RP4-536B24.2',
'ENSG00000260603' => 'GS1-21A4.1',
'ENSG00000270385' => 'GS1-21A4.2',
'ENSG00000278598' => 'MIR6775',
'ENSMUSG00000025317' => 'Car5a',
'ENSMUSG00000040010' => 'Slc7a5',
'ENSMUSG00000074052' => 'BC048644',
'ENSMUSG00000097969' => 'Gm26999'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 9 => 'Brain',
(int) 13 => 'Breast',
(int) 18 => 'Colon',
(int) 22 => 'Heart',
(int) 27 => 'Kidney',
(int) 33 => 'Liver',
(int) 38 => 'Lung',
(int) 42 => 'Muscle',
(int) 48 => 'Ovary',
(int) 54 => 'Placenta',
(int) 56 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000261622' => array(
'start' => '87830023',
'end' => '87869488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC7A5-001'
),
'ENST00000563489' => array(
'start' => '87832732',
'end' => '87836805',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SLC7A5-003'
),
'ENST00000565644' => array(
'start' => '87830023',
'end' => '87863639',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC7A5-002'
),
'ENST00000309893' => array(
'start' => '87881546',
'end' => '87936516',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CA5A-001'
),
'ENST00000566402' => array(
'start' => '87888018',
'end' => '87892268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CA5A-003'
),
'ENST00000568801' => array(
'start' => '87925539',
'end' => '87936529',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CA5A-002'
),
'ENST00000563687' => array(
'start' => '87836532',
'end' => '87837663',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-536B24.2-001'
),
'ENST00000562644' => array(
'start' => '87892938',
'end' => '87893685',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'GS1-21A4.1-001'
),
'ENST00000604757' => array(
'start' => '87892955',
'end' => '87893735',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'GS1-21A4.2-001'
),
'ENST00000617557' => array(
'start' => '87834592',
'end' => '87834660',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR6775-201'
),
'ENSMUST00000057653' => array(
'start' => '121916126',
'end' => '121944904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Car5a-001'
),
'ENSMUST00000151462' => array(
'start' => '121918054',
'end' => '121927474',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Car5a-002'
),
'ENSMUST00000045557' => array(
'start' => '121881150',
'end' => '121907694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc7a5-001'
),
'ENSMUST00000182165' => array(
'start' => '121882802',
'end' => '121883914',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Slc7a5-003'
),
'ENSMUST00000183015' => array(
'start' => '121888374',
'end' => '121896502',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Slc7a5-002'
),
'ENSMUST00000140928' => array(
'start' => '121907833',
'end' => '121918428',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-001'
),
'ENSMUST00000181944' => array(
'start' => '121907833',
'end' => '121909824',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-002'
),
'ENSMUST00000183009' => array(
'start' => '121919024',
'end' => '121919690',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26999-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0002SX_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0002SX_0001' => array(
'genes_in_region' => array(
'ENSG00000103257' => array(
[maximum depth reached]
),
'ENSG00000174990' => array(
[maximum depth reached]
),
'ENSG00000260466' => array(
[maximum depth reached]
),
'ENSG00000260603' => array(
[maximum depth reached]
),
'ENSG00000270385' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Testis',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Ovary',
(int) 39 => 'Liver',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Colon',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Heart',
(int) 47 => 'Kidney',
(int) 48 => 'Muscle',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Breast',
(int) 53 => 'Colon',
(int) 54 => 'Heart',
(int) 55 => 'Kidney',
(int) 56 => 'Liver',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000103257' => 'solute carrier family 7 (amino acid transporter light chain, L system), member 5',
'ENSG00000174990' => 'carbonic anhydrase VA, mitochondrial',
'ENSG00000260466' => null,
'ENSG00000260603' => null,
'ENSG00000270385' => null,
'ENSG00000278598' => 'microRNA 6775',
'ENSMUSG00000025317' => 'carbonic anhydrase 5a, mitochondrial',
'ENSMUSG00000040010' => 'solute carrier family 7 (cationic amino acid transporter, y+ system), member 5',
'ENSMUSG00000074052' => 'cDNA sequence BC048644',
'ENSMUSG00000097969' => 'predicted gene, 26999'
)
$gene_name_arr = array(
'ENSG00000103257' => 'SLC7A5',
'ENSG00000174990' => 'CA5A',
'ENSG00000260466' => 'RP4-536B24.2',
'ENSG00000260603' => 'GS1-21A4.1',
'ENSG00000270385' => 'GS1-21A4.2',
'ENSG00000278598' => 'MIR6775',
'ENSMUSG00000025317' => 'Car5a',
'ENSMUSG00000040010' => 'Slc7a5',
'ENSMUSG00000074052' => 'BC048644',
'ENSMUSG00000097969' => 'Gm26999'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0002SX_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '87830023',
'seq_end' => '87936529',
'region_length' => '106506',
'region_type' => 'CGP',
'el_id' => 'ENSG00000103257-ENSG00000174990'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0002SX_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '121881150',
'seq_end' => '121944904',
'region_length' => '63754',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000040010-ENSMUSG00000025317'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 9 => 'Brain',
(int) 13 => 'Breast',
(int) 18 => 'Colon',
(int) 22 => 'Heart',
(int) 27 => 'Kidney',
(int) 33 => 'Liver',
(int) 38 => 'Lung',
(int) 42 => 'Muscle',
(int) 48 => 'Ovary',
(int) 54 => 'Placenta',
(int) 56 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000261622' => array(
'start' => '87830023',
'end' => '87869488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC7A5-001'
),
'ENST00000563489' => array(
'start' => '87832732',
'end' => '87836805',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SLC7A5-003'
),
'ENST00000565644' => array(
'start' => '87830023',
'end' => '87863639',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC7A5-002'
),
'ENST00000309893' => array(
'start' => '87881546',
'end' => '87936516',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CA5A-001'
),
'ENST00000566402' => array(
'start' => '87888018',
'end' => '87892268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CA5A-003'
),
'ENST00000568801' => array(
'start' => '87925539',
'end' => '87936529',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CA5A-002'
),
'ENST00000563687' => array(
'start' => '87836532',
'end' => '87837663',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-536B24.2-001'
),
'ENST00000562644' => array(
'start' => '87892938',
'end' => '87893685',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'GS1-21A4.1-001'
),
'ENST00000604757' => array(
'start' => '87892955',
'end' => '87893735',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'GS1-21A4.2-001'
),
'ENST00000617557' => array(
'start' => '87834592',
'end' => '87834660',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR6775-201'
),
'ENSMUST00000057653' => array(
'start' => '121916126',
'end' => '121944904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Car5a-001'
),
'ENSMUST00000151462' => array(
'start' => '121918054',
'end' => '121927474',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Car5a-002'
),
'ENSMUST00000045557' => array(
'start' => '121881150',
'end' => '121907694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc7a5-001'
),
'ENSMUST00000182165' => array(
'start' => '121882802',
'end' => '121883914',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Slc7a5-003'
),
'ENSMUST00000183015' => array(
'start' => '121888374',
'end' => '121896502',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Slc7a5-002'
),
'ENSMUST00000140928' => array(
'start' => '121907833',
'end' => '121918428',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-001'
),
'ENSMUST00000181944' => array(
'start' => '121907833',
'end' => '121909824',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-002'
),
'ENSMUST00000183009' => array(
'start' => '121919024',
'end' => '121919690',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26999-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0002SX_0001' => array(
'genes_in_region' => array(
'ENSG00000103257' => array(
[maximum depth reached]
),
'ENSG00000174990' => array(
[maximum depth reached]
),
'ENSG00000260466' => array(
[maximum depth reached]
),
'ENSG00000260603' => array(
[maximum depth reached]
),
'ENSG00000270385' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Testis',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Ovary',
(int) 39 => 'Liver',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Colon',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Heart',
(int) 47 => 'Kidney',
(int) 48 => 'Muscle',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Breast',
(int) 53 => 'Colon',
(int) 54 => 'Heart',
(int) 55 => 'Kidney',
(int) 56 => 'Liver',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0002SX_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '121881150',
'seq_end' => '121944904',
'region_length' => '63754',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000040010-ENSMUSG00000025317'
)
)
$gene_el = array(
'ENST00000604757' => array(
'Adipose' => array(
'average_FPKM' => '0.089',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.240',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.045',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.101',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.618',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.084',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000270385'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.089',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.240',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.045',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.101',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.618',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.084',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000604757'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0002SX_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000103257' => 'solute carrier family 7 (amino acid transporter light chain, L system), member 5',
'ENSG00000174990' => 'carbonic anhydrase VA, mitochondrial',
'ENSG00000260466' => null,
'ENSG00000260603' => null,
'ENSG00000270385' => null,
'ENSG00000278598' => 'microRNA 6775',
'ENSMUSG00000025317' => 'carbonic anhydrase 5a, mitochondrial',
'ENSMUSG00000040010' => 'solute carrier family 7 (cationic amino acid transporter, y+ system), member 5',
'ENSMUSG00000074052' => 'cDNA sequence BC048644',
'ENSMUSG00000097969' => 'predicted gene, 26999'
),
'gene_name_arr' => array(
'ENSG00000103257' => 'SLC7A5',
'ENSG00000174990' => 'CA5A',
'ENSG00000260466' => 'RP4-536B24.2',
'ENSG00000260603' => 'GS1-21A4.1',
'ENSG00000270385' => 'GS1-21A4.2',
'ENSG00000278598' => 'MIR6775',
'ENSMUSG00000025317' => 'Car5a',
'ENSMUSG00000040010' => 'Slc7a5',
'ENSMUSG00000074052' => 'BC048644',
'ENSMUSG00000097969' => 'Gm26999'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 9 => 'Brain',
(int) 13 => 'Breast',
(int) 18 => 'Colon',
(int) 22 => 'Heart',
(int) 27 => 'Kidney',
(int) 33 => 'Liver',
(int) 38 => 'Lung',
(int) 42 => 'Muscle',
(int) 48 => 'Ovary',
(int) 54 => 'Placenta',
(int) 56 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 18,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000261622' => array(
'start' => '87830023',
'end' => '87869488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC7A5-001'
),
'ENST00000563489' => array(
'start' => '87832732',
'end' => '87836805',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SLC7A5-003'
),
'ENST00000565644' => array(
'start' => '87830023',
'end' => '87863639',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC7A5-002'
),
'ENST00000309893' => array(
'start' => '87881546',
'end' => '87936516',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CA5A-001'
),
'ENST00000566402' => array(
'start' => '87888018',
'end' => '87892268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CA5A-003'
),
'ENST00000568801' => array(
'start' => '87925539',
'end' => '87936529',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CA5A-002'
),
'ENST00000563687' => array(
'start' => '87836532',
'end' => '87837663',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-536B24.2-001'
),
'ENST00000562644' => array(
'start' => '87892938',
'end' => '87893685',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'GS1-21A4.1-001'
),
'ENST00000604757' => array(
'start' => '87892955',
'end' => '87893735',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'GS1-21A4.2-001'
),
'ENST00000617557' => array(
'start' => '87834592',
'end' => '87834660',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR6775-201'
),
'ENSMUST00000057653' => array(
'start' => '121916126',
'end' => '121944904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Car5a-001'
),
'ENSMUST00000151462' => array(
'start' => '121918054',
'end' => '121927474',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Car5a-002'
),
'ENSMUST00000045557' => array(
'start' => '121881150',
'end' => '121907694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc7a5-001'
),
'ENSMUST00000182165' => array(
'start' => '121882802',
'end' => '121883914',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Slc7a5-003'
),
'ENSMUST00000183015' => array(
'start' => '121888374',
'end' => '121896502',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Slc7a5-002'
),
'ENSMUST00000140928' => array(
'start' => '121907833',
'end' => '121918428',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-001'
),
'ENSMUST00000181944' => array(
'start' => '121907833',
'end' => '121909824',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-002'
),
'ENSMUST00000183009' => array(
'start' => '121919024',
'end' => '121919690',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26999-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0002SX_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0002SX_0001' => array(
'genes_in_region' => array(
'ENSG00000103257' => array(
[maximum depth reached]
),
'ENSG00000174990' => array(
[maximum depth reached]
),
'ENSG00000260466' => array(
[maximum depth reached]
),
'ENSG00000260603' => array(
[maximum depth reached]
),
'ENSG00000270385' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Testis',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Ovary',
(int) 39 => 'Liver',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Colon',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Heart',
(int) 47 => 'Kidney',
(int) 48 => 'Muscle',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Breast',
(int) 53 => 'Colon',
(int) 54 => 'Heart',
(int) 55 => 'Kidney',
(int) 56 => 'Liver',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000103257' => 'solute carrier family 7 (amino acid transporter light chain, L system), member 5',
'ENSG00000174990' => 'carbonic anhydrase VA, mitochondrial',
'ENSG00000260466' => null,
'ENSG00000260603' => null,
'ENSG00000270385' => null,
'ENSG00000278598' => 'microRNA 6775',
'ENSMUSG00000025317' => 'carbonic anhydrase 5a, mitochondrial',
'ENSMUSG00000040010' => 'solute carrier family 7 (cationic amino acid transporter, y+ system), member 5',
'ENSMUSG00000074052' => 'cDNA sequence BC048644',
'ENSMUSG00000097969' => 'predicted gene, 26999'
)
$gene_name_arr = array(
'ENSG00000103257' => 'SLC7A5',
'ENSG00000174990' => 'CA5A',
'ENSG00000260466' => 'RP4-536B24.2',
'ENSG00000260603' => 'GS1-21A4.1',
'ENSG00000270385' => 'GS1-21A4.2',
'ENSG00000278598' => 'MIR6775',
'ENSMUSG00000025317' => 'Car5a',
'ENSMUSG00000040010' => 'Slc7a5',
'ENSMUSG00000074052' => 'BC048644',
'ENSMUSG00000097969' => 'Gm26999'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0002SX_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '87830023',
'seq_end' => '87936529',
'region_length' => '106506',
'region_type' => 'CGP',
'el_id' => 'ENSG00000103257-ENSG00000174990'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0002SX_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '121881150',
'seq_end' => '121944904',
'region_length' => '63754',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000040010-ENSMUSG00000025317'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 9 => 'Brain',
(int) 13 => 'Breast',
(int) 18 => 'Colon',
(int) 22 => 'Heart',
(int) 27 => 'Kidney',
(int) 33 => 'Liver',
(int) 38 => 'Lung',
(int) 42 => 'Muscle',
(int) 48 => 'Ovary',
(int) 54 => 'Placenta',
(int) 56 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 18
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000261622' => array(
'start' => '87830023',
'end' => '87869488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC7A5-001'
),
'ENST00000563489' => array(
'start' => '87832732',
'end' => '87836805',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SLC7A5-003'
),
'ENST00000565644' => array(
'start' => '87830023',
'end' => '87863639',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC7A5-002'
),
'ENST00000309893' => array(
'start' => '87881546',
'end' => '87936516',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CA5A-001'
),
'ENST00000566402' => array(
'start' => '87888018',
'end' => '87892268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CA5A-003'
),
'ENST00000568801' => array(
'start' => '87925539',
'end' => '87936529',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CA5A-002'
),
'ENST00000563687' => array(
'start' => '87836532',
'end' => '87837663',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-536B24.2-001'
),
'ENST00000562644' => array(
'start' => '87892938',
'end' => '87893685',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'GS1-21A4.1-001'
),
'ENST00000604757' => array(
'start' => '87892955',
'end' => '87893735',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'GS1-21A4.2-001'
),
'ENST00000617557' => array(
'start' => '87834592',
'end' => '87834660',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR6775-201'
),
'ENSMUST00000057653' => array(
'start' => '121916126',
'end' => '121944904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Car5a-001'
),
'ENSMUST00000151462' => array(
'start' => '121918054',
'end' => '121927474',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Car5a-002'
),
'ENSMUST00000045557' => array(
'start' => '121881150',
'end' => '121907694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc7a5-001'
),
'ENSMUST00000182165' => array(
'start' => '121882802',
'end' => '121883914',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Slc7a5-003'
),
'ENSMUST00000183015' => array(
'start' => '121888374',
'end' => '121896502',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Slc7a5-002'
),
'ENSMUST00000140928' => array(
'start' => '121907833',
'end' => '121918428',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-001'
),
'ENSMUST00000181944' => array(
'start' => '121907833',
'end' => '121909824',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-002'
),
'ENSMUST00000183009' => array(
'start' => '121919024',
'end' => '121919690',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26999-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0002SX_0001' => array(
'genes_in_region' => array(
'ENSG00000103257' => array(
[maximum depth reached]
),
'ENSG00000174990' => array(
[maximum depth reached]
),
'ENSG00000260466' => array(
[maximum depth reached]
),
'ENSG00000260603' => array(
[maximum depth reached]
),
'ENSG00000270385' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Testis',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Ovary',
(int) 39 => 'Liver',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 42 => 'Colon',
(int) 43 => 'Adrenal',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Heart',
(int) 47 => 'Kidney',
(int) 48 => 'Muscle',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Breast',
(int) 53 => 'Colon',
(int) 54 => 'Heart',
(int) 55 => 'Kidney',
(int) 56 => 'Liver',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0002SX_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '121881150',
'seq_end' => '121944904',
'region_length' => '63754',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000040010-ENSMUSG00000025317'
)
)
$gene_el = array(
'ENST00000604757' => array(
'Adipose' => array(
'average_FPKM' => '0.089',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.240',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.045',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.101',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.618',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.084',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000270385'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.089',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.240',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.052',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.045',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.101',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.618',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.084',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000604757'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(SLC7A5)