C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13529
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121118 Gm13529-001 ENSMUSG00000081244 10090 - 2:33652389-33652798 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverOvaryTestisENSMUST00000121118
Transcript ID Adipose Bladder Brain Kidney Liver Ovary Testis
ENSMUST00000121118 0.175±0.00 0.100±0.03 0.053±0.01 0.122±0.00 0.119±0.08 0.376±0.00 0.147±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008M0 CIL_0008M0_0002 VISTA 2:33488143-34090459
CIL_0002XW CIL_0002XW_0002 CGP 2:33560965-33887946
CIL_0007X9 CIL_0007X9_0002 VISTA 2:33575330-34178839

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 597
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 560
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 614
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 411
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 614
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 614
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 614
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 488
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 566
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 507
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 459
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 573
ENST00000453859 AC019080.1-001 processed_pseudogene Homo_sapiens 0 311
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 532
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 422
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 516
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 274
ENST00000559063 CTD-2651B20.2-001 processed_pseudogene Homo_sapiens 0 459
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 329
ENST00000603240 RP11-27M5.1-001 processed_pseudogene Homo_sapiens 4e-32 141
ENST00000604179 RP11-3K24.2-001 processed_pseudogene Homo_sapiens 0 246

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