C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000337_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185666-ENSG00000185666 CGP 9606 22:32512552-33058372
GeneTranscriptPositionBiotype
ENSG00000100234 (TIMP3)
TIMP metallopeptidase inhibitor 3
ENST00000266085 (TIMP3-001) 32801701-32863043 protein_coding
ENSG00000228194 (CTA-415G2.2)
ENST00000446798 (CTA-415G2.2-002) 33014980-33015461 processed_pseudogene
ENSG00000236054 (LL22NC03-104C7.1)
ENST00000428201 (LL22NC03-104C7.1-001) 32583300-32584204 antisense
ENSG00000279338 (RP1-309I22.2)
ENST00000624184 (RP1-309I22.2-001) 32836706-32865634 sense_overlapping
CIL_000337_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059602-ENSMUSG00000059602 CGP 10090 10:86055125-86498896
GeneTranscriptPositionBiotype
ENSMUSG00000020044 (Timp3)
tissue inhibitor of metalloproteinase 3
ENSMUST00000020234 (Timp3-001) 86300372-86349506 protein_coding
ENSMUST00000132307 (Timp3-004) 86302854-86343981 protein_coding
ENSMUST00000136045 (Timp3-003) 86300556-86326834 processed_transcript
ENSMUST00000151134 (Timp3-002) 86300554-86306781 processed_transcript
ENSMUSG00000059602 (Syn3)
synapsin III
ENSMUST00000120638 (Syn3-001) 86055125-86498856 protein_coding
ENSMUST00000121789 (Syn3-005) 86291593-86498882 protein_coding
ENSMUST00000123783 (Syn3-003) 86347774-86491897 retained_intron
ENSMUST00000139197 (Syn3-004) 86351145-86498896 retained_intron
ENSMUST00000143319 (Syn3-006) 86057423-86066843 processed_transcript
ENSMUST00000145864 (Syn3-002) 86070502-86491897 retained_intron
ENSMUSG00000085435 (4930486F22Rik)
RIKEN cDNA 4930486F22 gene
ENSMUST00000131378 (4930486F22Rik-001) 86095885-86113580 antisense
ENSMUSG00000087256 (Gm15990)
predicted gene 15990
ENSMUST00000132223 (Gm15990-001) 86125827-86129854 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000337_0001ENSG00000100234ENST00000266085ENSG00000228194ENST00000446798ENSG00000236054ENST00000428201ENSG00000279338ENST00000624184CIL_000337_0002ENSMUSG00000020044ENSMUST00000020234ENSMUST00000132307ENSMUST00000136045ENSMUST00000151134ENSMUSG00000059602ENSMUST00000120638ENSMUST00000121789ENSMUST00000123783ENSMUST00000139197ENSMUST00000143319ENSMUST00000145864ENSMUSG00000085435ENSMUST00000131378ENSMUSG00000087256ENSMUST00000132223
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000337_0001ENSG00000100234ENST00000266085ENSG00000228194ENST00000446798ENSG00000236054ENST00000428201ENSG00000279338ENST00000624184CIL_000337_0002ENSMUSG00000020044ENSMUST00000020234ENSMUST00000136045ENSMUSG00000059602ENSMUST00000120638ENSMUSG00000085435ENSMUST00000131378ENSMUSG00000087256ENSMUST00000132223
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100234 ENST00000266085 716.689±0.00 280.857±0.00 26.124±0.00 28.417±18.74 172.480±119.52 128.068±104.14 91.585±65.69 136.103±127.96 45.463±16.45 412.504±283.37 33.756±19.04 34.864±19.83 1099.166±504.27 152.129±110.92
ENSG00000228194 ENST00000446798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00
ENSG00000236054 ENST00000428201 0.495±0.00 0.204±0.00 N/A 0.393±0.16 0.278±0.00 N/A N/A 0.168±0.00 0.173±0.00 0.501±0.00 N/A 0.585±0.00 0.313±0.20 0.851±0.00
ENSG00000279338 ENST00000624184 N/A N/A 1.302±0.00 0.420±0.00 1.360±0.00 0.442±0.00 0.509±0.00 N/A 1.383±0.00 5.810±0.00 0.936±0.00 0.914±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020044 ENSMUST00000020234 64.773±11.62 83.543±8.62 88.639±0.50 7.705±1.77 45.590±5.97 22.088±3.21 36.675±4.28 279.835±42.06 3.497±0.48 131.907±16.75 23.821±3.36 56.259±18.53 16.109±16.67 5.582±1.81
ENSMUST00000132307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136045 N/A 156.835±11.88 N/A N/A 48.755±5.29 15.149±1.16 N/A N/A N/A 87.533±0.00 N/A N/A N/A N/A
ENSMUST00000151134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059602 ENSMUST00000120638 N/A N/A N/A 6.928±3.99 N/A N/A N/A N/A 0.491±0.00 N/A N/A N/A N/A N/A
ENSMUST00000121789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085435 ENSMUST00000131378 0.025±0.00 N/A 0.016±0.01 0.058±0.00 N/A 0.070±0.00 N/A 0.031±0.00 0.006±0.00 N/A N/A 0.019±0.00 0.011±0.01 0.182±0.13
ENSMUSG00000087256 ENSMUST00000132223 0.010±0.00 0.096±0.00 0.014±0.00 0.127±0.10 0.018±0.00 0.032±0.00 0.020±0.00 0.310±0.16 0.012±0.00 0.065±0.04 0.012±0.00 0.006±0.00 0.073±0.04 1.079±0.09

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