C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00038G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074695-ENSDARG00000052607 CGP 7955 13:48083414-48179593
GeneTranscriptPositionBiotype
ENSDARG00000052607 (TMEM87B (1 of 2))
transmembrane protein 87B 		ENSDART00000074489 (TMEM87B (1 of 2)-201) 48159062-48179593 protein_coding
ENSDARG00000074695 (mertk)
c-mer proto-oncogene tyrosine kinase 		ENSDART00000109266 (mertk-201) 48083531-48150481 protein_coding
ENSDART00000142729 (mertk-001) 48083414-48091683 protein_coding
CIL_00038G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153208-ENSG00000153214 CGP 9606 2:111898479-112119318
GeneTranscriptPositionBiotype
ENSG00000153208 (MERTK)
MER proto-oncogene, tyrosine kinase 		ENST00000295408 (MERTK-001) 111898479-112029561 protein_coding
ENST00000409780 (MERTK-002) 111898629-112029367 protein_coding
ENST00000421804 (MERTK-201) 111898608-112029366 protein_coding
ENST00000439966 (MERTK-003) 111898664-112029000 nonsense_mediated_decay
ENST00000449344 (MERTK-005) 112019413-112028663 protein_coding
ENST00000473065 (MERTK-004) 111997370-112003443 retained_intron
ENST00000616902 (MERTK-202) 111982913-112028563 protein_coding
ENSG00000153214 (TMEM87B)
transmembrane protein 87B 		ENST00000283206 (TMEM87B-001) 112055223-112119318 protein_coding
ENST00000452029 (TMEM87B-003) 112055720-112081411 nonsense_mediated_decay
ENST00000452614 (TMEM87B-002) 112055720-112081411 protein_coding
ENST00000463427 (TMEM87B-004) 112086024-112105910 processed_transcript
ENST00000471632 (TMEM87B-005) 112089632-112116339 processed_transcript
ENSG00000225496 (AC104651.2)
 ENST00000427559 (AC104651.2-001) 111940302-111941036 processed_pseudogene
ENSG00000232277 (AC104651.3)
 ENST00000447549 (AC104651.3-001) 111952144-111952671 processed_pseudogene
ENSG00000240183 (RN7SL297P)
RNA, 7SL, cytoplasmic 297, pseudogene 		ENST00000483161 (RN7SL297P-201) 111930175-111930467 misc_RNA
CIL_00038G_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000014361-ENSMUSG00000014353 CGP 10090 2:128698956-128854261
GeneTranscriptPositionBiotype
ENSMUSG00000014353 (Tmem87b)
transmembrane protein 87B 		ENSMUST00000110325 (Tmem87b-001) 128818118-128854261 protein_coding
ENSMUST00000126160 (Tmem87b-003) 128841153-128849725 retained_intron
ENSMUST00000143398 (Tmem87b-004) 128831622-128850316 processed_transcript
ENSMUST00000143686 (Tmem87b-005) 128849960-128851411 processed_transcript
ENSMUST00000152210 (Tmem87b-002) 128818384-128851792 protein_coding
ENSMUSG00000014361 (Mertk)
c-mer proto-oncogene tyrosine kinase 		ENSMUST00000014505 (Mertk-001) 128698956-128802894 protein_coding
ENSMUST00000140221 (Mertk-002) 128771313-128802678 processed_transcript
ENSMUSG00000085036 (Gm14011)
predicted gene 14011 		ENSMUST00000145178 (Gm14011-001) 128751271-128753705 antisense
ENSMUSG00000087785 (Gm23172)
predicted gene, 23172 		ENSMUST00000157160 (Gm23172-201) 128780376-128780499 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038G_0001ENSDARG00000052607ENSDART00000074489ENSDARG00000074695ENSDART00000109266ENSDART00000142729CIL_00038G_0002ENSG00000153208ENST00000295408ENST00000409780ENST00000421804ENST00000439966ENST00000449344ENST00000473065ENST00000616902ENSG00000153214ENST00000283206ENST00000452029ENST00000452614ENST00000463427ENST00000471632ENSG00000225496ENST00000427559ENSG00000232277ENST00000447549ENSG00000240183ENST00000483161CIL_00038G_0003ENSMUSG00000014353ENSMUST00000110325ENSMUST00000126160ENSMUST00000143398ENSMUST00000143686ENSMUST00000152210ENSMUSG00000014361ENSMUST00000014505ENSMUST00000140221ENSMUSG00000085036ENSMUST00000145178ENSMUSG00000087785ENSMUST00000157160
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038G_0001ENSDARG00000052607ENSDART00000074489ENSDARG00000074695ENSDART00000109266CIL_00038G_0002ENSG00000153208ENST00000295408ENST00000409780ENST00000421804ENST00000439966ENST00000449344ENSG00000153214ENST00000283206ENST00000463427ENSG00000225496ENST00000427559ENSG00000232277ENST00000447549ENSG00000240183ENST00000483161CIL_00038G_0003ENSMUSG00000014353ENSMUST00000110325ENSMUST00000126160ENSMUST00000143398ENSMUSG00000014361ENSMUST00000014505ENSMUST00000140221ENSMUSG00000085036ENSMUST00000145178ENSMUSG00000087785ENSMUST00000157160
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000052607 ENSDART00000074489 N/A N/A N/A 8.460±0.00 N/A N/A 0.938±0.00 N/A 0.736±0.00 N/A 0.708±0.00 N/A N/A N/A
ENSDARG00000074695 ENSDART00000109266 N/A N/A N/A 1.607±0.54 N/A N/A 1.374±0.82 1.090±0.64 1.745±0.00 N/A 1.173±0.00 N/A N/A N/A
ENSDART00000142729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153208 ENST00000295408 0.560±0.00 0.735±0.00 N/A 0.850±0.20 N/A 0.372±0.00 0.737±0.00 1.365±0.00 0.786±0.00 0.283±0.00 N/A N/A N/A 2.197±0.55
ENST00000409780 1.369±0.00 N/A N/A 0.684±0.00 1.347±0.00 N/A N/A N/A 0.634±0.00 N/A 0.555±0.00 0.809±0.00 N/A 1.149±0.00
ENST00000421804 1.049±0.00 N/A 2.960±0.00 1.422±0.00 2.705±0.00 0.872±0.36 0.574±0.00 2.369±0.02 2.709±0.00 1.277±0.22 N/A 2.003±0.51 3.705±1.28 N/A
ENST00000439966 3.236±0.00 3.743±0.00 N/A 3.637±0.00 2.362±1.30 1.629±0.34 1.418±0.00 8.458±0.00 2.820±2.04 1.604±0.09 0.320±0.06 3.675±1.82 5.008±2.13 5.910±2.36
ENST00000449344 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.650±0.00 0.646±0.00 N/A N/A N/A
ENST00000473065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000153214 ENST00000283206 3.160±0.00 4.354±0.00 0.926±0.00 1.797±0.00 2.605±0.53 5.756±2.00 1.512±0.00 2.895±1.55 1.268±0.00 3.610±0.23 0.052±0.00 5.954±2.16 4.945±1.57 2.828±1.03
ENST00000452029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463427 N/A N/A 2.375±0.00 2.231±0.00 N/A N/A N/A N/A N/A N/A 0.895±0.00 11.622±0.00 N/A N/A
ENST00000471632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225496 ENST00000427559 N/A 0.119±0.00 N/A 0.058±0.00 0.349±0.00 0.027±0.00 N/A N/A 0.039±0.00 N/A N/A N/A N/A 0.026±0.00
ENSG00000232277 ENST00000447549 N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A 0.331±0.25 N/A N/A N/A N/A N/A
ENSG00000240183 ENST00000483161 N/A 0.120±0.00 N/A N/A 0.310±0.25 N/A 0.139±0.08 N/A 0.405±0.00 N/A N/A 0.189±0.00 N/A 0.183±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014353 ENSMUST00000110325 5.675±2.11 11.054±5.45 11.508±0.90 5.690±0.43 4.233±0.52 5.432±2.41 1.972±0.95 3.904±1.90 2.487±1.60 6.145±1.37 1.629±0.72 5.181±2.63 11.085±4.51 0.842±0.56
ENSMUST00000126160 N/A N/A N/A 1.331±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143398 N/A N/A N/A 5.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.267±0.00
ENSMUST00000143686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000014361 ENSMUST00000014505 2.843±0.84 2.831±0.34 1.441±0.16 1.049±1.00 1.721±0.46 1.061±0.00 0.725±0.40 5.064±1.86 1.658±0.65 5.457±2.31 0.215±0.05 4.443±1.65 5.476±3.24 0.236±0.03
ENSMUST00000140221 1.095±0.17 N/A 2.049±0.26 4.874±0.00 N/A 3.321±0.75 0.312±0.00 1.844±0.00 1.651±0.26 N/A 0.293±0.03 4.815±2.21 3.536±1.97 0.606±0.27
ENSMUSG00000085036 ENSMUST00000145178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 0.519±0.40 N/A
ENSMUSG00000087785 ENSMUST00000157160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.878±3.58 N/A N/A

Loading