C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003GV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100342-ENSG00000100345 CGP 9606 22:36253010-36388018
GeneTranscriptPositionBiotype
ENSG00000100342 (APOL1)
apolipoprotein L, 1 		ENST00000319136 (APOL1-003) 36253078-36267521 protein_coding
ENST00000397278 (APOL1-001) 36253010-36267525 protein_coding
ENST00000397279 (APOL1-201) 36253141-36267083 protein_coding
ENST00000422471 (APOL1-008) 36253131-36261673 nonsense_mediated_decay
ENST00000422706 (APOL1-202) 36253071-36267530 protein_coding
ENST00000426053 (APOL1-203) 36253071-36267530 protein_coding
ENST00000427990 (APOL1-011) 36253133-36265315 protein_coding
ENST00000431184 (APOL1-014) 36253164-36261633 nonsense_mediated_decay
ENST00000433768 (APOL1-013) 36253161-36261644 protein_coding
ENST00000438034 (APOL1-009) 36253133-36261675 protein_coding
ENST00000439680 (APOL1-012) 36253133-36261699 nonsense_mediated_decay
ENST00000475519 (APOL1-010) 36253133-36257560 retained_intron
ENSG00000100345 (MYH9)
myosin, heavy chain 9, non-muscle 		ENST00000216181 (MYH9-001) 36281281-36388018 protein_coding
ENST00000401701 (MYH9-002) 36325033-36365112 protein_coding
ENST00000456729 (MYH9-015) 36348928-36365111 protein_coding
ENST00000459960 (MYH9-009) 36295512-36297323 retained_intron
ENST00000463027 (MYH9-003) 36320274-36328952 processed_transcript
ENST00000472210 (MYH9-005) 36320241-36321922 processed_transcript
ENST00000473022 (MYH9-007) 36302308-36304025 retained_intron
ENST00000475726 (MYH9-010) 36284162-36286044 processed_transcript
ENST00000477189 (MYH9-006) 36316513-36319835 retained_intron
ENST00000486218 (MYH9-011) 36284214-36286021 retained_intron
ENST00000495928 (MYH9-008) 36300910-36301714 processed_transcript
ENSG00000278420 (MIR6819)
microRNA 6819 		ENST00000622122 (MIR6819-201) 36286847-36286907 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003GV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056656-ENSMUSG00000022443 CGP 10090 15:77747799-77842175
GeneTranscriptPositionBiotype
ENSMUSG00000022443 (Myh9)
myosin, heavy polypeptide 9, non-muscle 		ENSMUST00000016771 (Myh9-001) 77760587-77842175 protein_coding
ENSMUST00000123101 (Myh9-006) 77790741-77842047 nonsense_mediated_decay
ENSMUST00000124844 (Myh9-005) 77794652-77813231 processed_transcript
ENSMUST00000126796 (Myh9-004) 77788191-77842056 retained_intron
ENSMUST00000129453 (Myh9-002) 77790225-77842105 retained_intron
ENSMUST00000134878 (Myh9-003) 77805546-77842105 retained_intron
ENSMUST00000139729 (Myh9-007) 77765328-77767190 retained_intron
ENSMUSG00000056656 (Apol8)
apolipoprotein L 8 		ENSMUST00000070911 (Apol8-201) 77748613-77755229 protein_coding
ENSMUST00000089450 (Apol8-202) 77747799-77753072 protein_coding
ENSMUSG00000084497 (Gm22107)
predicted gene, 22107 		ENSMUST00000122548 (Gm22107-201) 77840657-77840756 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003GV_0001ENSG00000100342ENST00000319136ENST00000397278ENST00000397279ENST00000422471ENST00000422706ENST00000426053ENST00000427990ENST00000431184ENST00000433768ENST00000438034ENST00000439680ENST00000475519ENSG00000100345ENST00000216181ENST00000401701ENST00000456729ENST00000459960ENST00000463027ENST00000472210ENST00000473022ENST00000475726ENST00000477189ENST00000486218ENST00000495928ENSG00000278420ENST00000622122CIL_0003GV_0002ENSMUSG00000022443ENSMUST00000016771ENSMUST00000123101ENSMUST00000124844ENSMUST00000126796ENSMUST00000129453ENSMUST00000134878ENSMUST00000139729ENSMUSG00000056656ENSMUST00000070911ENSMUST00000089450ENSMUSG00000084497ENSMUST00000122548
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003GV_0001ENSG00000100342ENST00000319136ENST00000397278ENST00000397279ENST00000422706ENST00000426053ENST00000427990ENSG00000100345ENST00000216181ENST00000475726ENSG00000278420ENST00000622122CIL_0003GV_0002ENSMUSG00000022443ENSMUST00000016771ENSMUST00000124844ENSMUSG00000056656ENSMUST00000070911ENSMUST00000089450ENSMUSG00000084497ENSMUST00000122548
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100342 ENST00000319136 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.926±0.00 N/A N/A N/A N/A
ENST00000397278 N/A N/A 0.799±0.00 N/A 1.991±0.00 0.781±0.00 0.243±0.00 6.045±2.84 7.735±5.85 10.834±9.01 N/A 8.908±5.45 28.542±2.94 N/A
ENST00000397279 7.976±0.00 N/A 2.742±0.00 1.616±1.37 5.130±0.49 5.237±3.83 2.608±1.92 9.392±1.27 4.312±0.00 3.264±0.00 2.686±0.00 6.709±3.59 15.762±0.00 8.742±0.00
ENST00000422471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422706 3.111±0.00 10.224±0.00 N/A 0.259±0.00 8.278±0.00 12.313±0.00 4.511±0.00 6.720±0.00 N/A 16.633±0.00 N/A 4.950±0.00 6.940±0.00 4.365±3.33
ENST00000426053 13.351±0.00 12.778±0.00 N/A 2.469±0.00 6.794±0.00 9.780±0.00 1.806±1.62 14.949±0.00 N/A N/A 1.488±0.92 12.801±4.46 17.948±9.31 7.064±5.16
ENST00000427990 N/A N/A N/A N/A N/A 2.538±0.00 0.910±0.00 22.247±0.00 N/A N/A 1.055±0.00 2.441±0.00 N/A N/A
ENST00000431184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100345 ENST00000216181 236.287±0.00 150.748±0.00 16.081±0.00 21.320±20.10 81.838±51.65 70.697±49.54 23.752±21.47 43.367±34.31 17.012±6.73 187.064±169.04 21.801±15.56 65.410±55.06 99.490±5.46 54.058±51.31
ENST00000401701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 226.158±0.00 198.757±0.00 28.673±0.00
ENST00000477189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000278420 ENST00000622122 N/A 2.583±0.00 N/A N/A 0.905±0.00 N/A N/A N/A N/A 2.798±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022443 ENSMUST00000016771 44.235±0.96 29.435±3.52 48.083±1.54 14.232±10.27 43.725±19.43 60.608±5.72 13.586±0.94 30.037±2.23 15.367±4.58 80.104±1.22 7.439±0.97 56.017±31.66 174.191±108.02 2.711±0.79
ENSMUST00000123101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124844 N/A N/A N/A N/A 52.596±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056656 ENSMUST00000070911 0.057±0.03 N/A 0.025±0.00 1.857±0.00 0.078±0.03 0.112±0.05 N/A 0.026±0.01 8.746±8.47 0.027±0.00 0.051±0.03 0.076±0.04 0.180±0.15 0.157±0.06
ENSMUST00000089450 0.054±0.04 N/A 0.091±0.00 0.075±0.00 0.043±0.00 N/A 0.020±0.01 0.040±0.01 19.318±16.23 0.061±0.00 0.034±0.00 0.108±0.00 0.195±0.14 0.055±0.00
ENSMUSG00000084497 ENSMUST00000122548 N/A N/A N/A N/A 6689.390±0.00 N/A 2415.355±100.09 N/A 159.646±58.82 2962.950±0.00 N/A N/A 103.354±0.00 N/A

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