C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003JH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000030957-ENSDARG00000074166 CGP 7955 17:22407487-22571744
GeneTranscriptPositionBiotype
ENSDARG00000030957 (yipf4)
Yip1 domain family, member 4 		ENSDART00000045099 (yipf4-001) 22407487-22415611 protein_coding
ENSDART00000141887 (yipf4-002) 22407645-22410208 processed_transcript
ENSDARG00000074166 (birc6)
baculoviral IAP repeat-containing 6 		ENSDART00000114100 (birc6-201) 22417559-22570865 protein_coding
ENSDART00000157328 (birc6-001) 22417371-22571744 protein_coding
ENSDARG00000097706 (si:dkey-11a7.3)
si:dkey-11a7.3 		ENSDART00000154316 (si:dkey-11a7.3-001) 22517185-22519655 antisense
ENSDART00000155489 (si:dkey-11a7.3-002) 22517783-22519647 antisense

Danio rerio Ensembl (Zv9)

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CIL_0003JH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119820-ENSG00000115760 CGP 9606 2:32277910-32618899
GeneTranscriptPositionBiotype
ENSG00000115760 (BIRC6)
baculoviral IAP repeat containing 6 		ENST00000421745 (BIRC6-001) 32357028-32618899 protein_coding
ENST00000431454 (BIRC6-004) 32436075-32442380 nonsense_mediated_decay
ENST00000444173 (BIRC6-003) 32433648-32441435 protein_coding
ENST00000461788 (BIRC6-008) 32515741-32519219 retained_intron
ENST00000462504 (BIRC6-006) 32472992-32476281 retained_intron
ENST00000465130 (BIRC6-010) 32602497-32611581 retained_intron
ENST00000466527 (BIRC6-011) 32388811-32401419 retained_intron
ENST00000470250 (BIRC6-009) 32575291-32594310 retained_intron
ENST00000471232 (BIRC6-002) 32524758-32618876 retained_intron
ENST00000483194 (BIRC6-005) 32443426-32449185 retained_intron
ENST00000496555 (BIRC6-007) 32509679-32513089 retained_intron
ENST00000497023 (BIRC6-012) 32502860-32505355 retained_intron
ENSG00000119820 (YIPF4)
Yip1 domain family, member 4 		ENST00000238831 (YIPF4-001) 32277910-32316594 protein_coding
ENST00000437765 (YIPF4-003) 32278231-32305866 nonsense_mediated_decay
ENST00000441084 (YIPF4-004) 32301443-32307362 protein_coding
ENST00000495355 (YIPF4-002) 32278129-32290920 retained_intron
ENSG00000207653 (MIR558)
microRNA 558 		ENST00000384920 (MIR558-201) 32532153-32532246 miRNA
ENSG00000272754 (AL133245.2)
 ENST00000608925 (AL133245.2-001) 32321638-32323002 lincRNA
ENSG00000274159 (AL133243.3)
 ENST00000614487 (AL133243.3-001) 32548675-32549040 sense_intronic
ENSG00000276334 (AL133243.1)
 ENST00000610331 (AL133243.1-001) 32521927-32523547 sense_intronic
ENSG00000276517 (AL133243.2)
 ENST00000617415 (AL133243.2-001) 32526504-32529507 sense_intronic
ENSG00000279544 (AL133243.4)
 ENST00000623116 (AL133243.4-001) 32563328-32566436 TEC
ENSG00000279897 (BIRC6-AS2)
BIRC6 antisense RNA 2 		ENST00000623382 (BIRC6-AS2-001) 32557520-32574818 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003JH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024072-ENSMUSG00000024073 CGP 10090 17:74489493-74703356
GeneTranscriptPositionBiotype
ENSMUSG00000024072 (Yipf4)
Yip1 domain family, member 4 		ENSMUST00000024873 (Yipf4-201) 74489493-74500277 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JH_0001ENSDARG00000030957ENSDART00000045099ENSDART00000141887ENSDARG00000074166ENSDART00000114100ENSDART00000157328ENSDARG00000097706ENSDART00000154316ENSDART00000155489CIL_0003JH_0002ENSG00000115760ENST00000421745ENST00000431454ENST00000444173ENST00000461788ENST00000462504ENST00000465130ENST00000466527ENST00000470250ENST00000471232ENST00000483194ENST00000496555ENST00000497023ENSG00000119820ENST00000238831ENST00000437765ENST00000441084ENST00000495355ENSG00000207653ENST00000384920ENSG00000272754ENST00000608925ENSG00000274159ENST00000614487ENSG00000276334ENST00000610331ENSG00000276517ENST00000617415ENSG00000279544ENST00000623116ENSG00000279897ENST00000623382CIL_0003JH_0003ENSMUSG00000024072ENSMUST00000024873
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JH_0001ENSDARG00000030957ENSDART00000045099ENSDARG00000074166ENSDART00000114100ENSDART00000157328ENSDARG00000097706ENSDART00000154316ENSDART00000155489CIL_0003JH_0002ENSG00000115760ENST00000421745ENST00000471232ENSG00000119820ENST00000238831ENST00000437765ENSG00000207653ENST00000384920ENSG00000272754ENST00000608925ENSG00000274159ENST00000614487ENSG00000276334ENST00000610331ENSG00000276517ENST00000617415ENSG00000279544ENST00000623116ENSG00000279897ENST00000623382CIL_0003JH_0003ENSMUSG00000024072ENSMUST00000024873
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030957 ENSDART00000045099 N/A N/A N/A 20.087±9.00 N/A N/A 29.919±7.17 26.618±6.38 5.141±0.00 N/A 12.912±0.00 N/A N/A N/A
ENSDART00000141887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000074166 ENSDART00000114100 N/A N/A N/A N/A N/A N/A N/A N/A 0.325±0.00 N/A N/A N/A N/A N/A
ENSDART00000157328 N/A N/A N/A 3.117±0.31 N/A N/A 2.467±0.00 1.879±0.00 1.345±0.00 N/A 0.803±0.00 N/A N/A N/A
ENSDARG00000097706 ENSDART00000154316 N/A N/A N/A 6.243±0.82 N/A N/A 0.039±0.00 0.337±0.00 N/A N/A 0.521±0.00 N/A N/A N/A
ENSDART00000155489 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115760 ENST00000421745 2.488±0.00 2.005±0.00 1.831±0.00 3.713±0.70 4.541±3.24 2.657±1.19 1.584±0.00 3.950±1.95 0.824±0.00 1.609±0.40 1.950±0.17 3.938±4.37 1.260±0.14 1.397±0.14
ENST00000431454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471232 4.002±0.00 6.542±0.00 N/A 2.767±0.00 3.054±0.00 N/A 2.574±0.00 6.981±0.00 3.951±0.00 4.683±0.00 N/A 5.359±0.40 2.348±0.25 4.502±0.62
ENST00000483194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000119820 ENST00000238831 2.582±0.00 4.034±0.00 1.057±0.00 3.750±1.73 2.551±1.03 2.654±0.96 2.154±1.21 2.599±1.05 1.966±0.02 1.737±0.17 1.279±0.78 2.794±0.46 1.817±0.37 2.735±0.62
ENST00000437765 9.885±0.00 N/A 6.822±0.00 12.130±0.00 11.209±2.04 13.338±5.26 10.265±4.38 10.080±0.54 9.353±3.01 11.782±1.63 5.416±1.35 13.125±3.30 6.579±2.03 10.700±2.40
ENST00000441084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207653 ENST00000384920 0.837±0.00 1.431±0.00 N/A 0.610±0.00 1.698±0.00 1.435±0.00 N/A N/A N/A N/A N/A N/A N/A 1.319±0.00
ENSG00000272754 ENST00000608925 0.129±0.00 1.439±0.00 0.387±0.00 0.482±0.00 0.301±0.01 0.088±0.00 0.148±0.00 0.072±0.00 0.042±0.00 0.312±0.00 0.265±0.13 0.263±0.10 0.224±0.00 0.506±0.21
ENSG00000274159 ENST00000614487 0.067±0.00 0.033±0.00 N/A 0.033±0.00 0.093±0.00 N/A 0.032±0.00 0.193±0.00 0.117±0.00 0.057±0.00 0.968±0.00 0.264±0.19 N/A 0.030±0.00
ENSG00000276334 ENST00000610331 0.248±0.00 0.266±0.00 1.776±0.00 0.836±0.10 1.007±0.68 1.327±1.15 0.281±0.04 0.914±0.54 1.922±1.77 1.315±1.09 0.104±0.07 1.050±0.95 0.279±0.13 0.565±0.23
ENSG00000276517 ENST00000617415 0.380±0.00 1.374±0.00 0.622±0.00 0.594±0.01 1.207±0.83 0.713±0.67 0.201±0.04 0.282±0.12 0.927±0.87 0.629±0.27 0.125±0.04 0.667±0.49 0.149±0.01 0.435±0.23
ENSG00000279544 ENST00000623116 0.072±0.00 0.434±0.00 0.883±0.00 0.198±0.07 0.818±0.73 0.516±0.43 0.217±0.13 0.445±0.36 0.486±0.46 0.570±0.46 0.200±0.17 0.199±0.28 0.014±0.00 0.096±0.01
ENSG00000279897 ENST00000623382 N/A 0.472±0.00 0.177±0.00 0.443±0.00 0.076±0.00 0.018±0.00 0.039±0.00 0.133±0.00 0.313±0.23 0.902±0.80 0.152±0.00 0.140±0.08 0.035±0.00 0.857±0.56
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024072 ENSMUST00000024873 15.796±3.34 175.856±25.74 17.044±2.32 8.180±2.78 44.059±35.18 58.355±18.38 8.563±0.87 18.256±9.34 11.904±3.90 50.653±23.35 5.865±0.22 77.223±43.78 12.136±4.46 7.170±3.22

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